YRC Public Data Repository - Protein Structure Prediction

Protein:	ATKA_ECOLI
Organism:	Escherichia coli
Length:	557 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATKA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83749461, gi\|... - gi\|83749461\|ref\|ZP_00946452.1\| Potassium-transporting ATPase A chain [Ralstonia solanacearum UW551],...	816.0	[0..4]	[557..3]
ATKA_RALSO - Potassium-transporting ATPase A chain OS=Ralstonia solanacearum GN=kdpA PE=3 SV=1 KDPA_RALSO - Potassium-transporting ATPase potassium-binding subunit OS=Ralstonia solanacearum (strain GMI1000) G...	806.0	[0..4]	[557..3]
ATKA_RHILO - Potassium-transporting ATPase A chain OS=Rhizobium loti GN=kdpA PE=3 SV=1 KDPA_RHILO - Potassium-transporting ATPase potassium-binding subunit OS=Rhizobium loti (strain MAFF303099) GN=kdp...	801.0	[0..1]	[557..1]
KDPA_DECAR - Potassium-transporting ATPase potassium-binding subunit OS=Dechloromonas aromatica (strain RCB) GN=k...	799.0	[0..1]	[556..1]
gi\|90426021, gi\|... - gi\|90426021\|ref\|YP_534391.1\| potassium-transporting ATPase subunit A [Rhodopseudomonas palustris Bis...	796.0	[0..1]	[557..1]
gi\|117622903, gi... - gi\|117622903\|ref\|YP_851816.1\| potassium-transporting ATPase subunit A [Escherichia coli APEC O1], gi...	795.0	[0..1]	[557..33]
KDPA_CHRVO - Potassium-transporting ATPase potassium-binding subunit OS=Chromobacterium violaceum (strain ATCC 12... ATKA_CHRVO - Potassium-transporting ATPase A chain OS=Chromobacterium violaceum GN=kdpA PE=3 SV=1	795.0	[0..1]	[556..1]
ATKA_BRAJA - Potassium-transporting ATPase A chain OS=Bradyrhizobium japonicum GN=kdpA PE=3 SV=1 KDPA_BRADU - Potassium-transporting ATPase potassium-binding subunit OS=Bradyrhizobium diazoefficiens (strain JCM...	792.0	[0..1]	[557..1]
gi\|188492970, gi... - gi\|75511152\|ref\|ZP_00733870.1\| COG2060: K+-transporting ATPase, A chain [Escherichia coli 53638], gi... gi\|193070637, gi... - gi\|75234518\|ref\|ZP_00718865.1\| COG2060: K+-transporting ATPase, A chain [Escherichia coli E110019], ... KDPA_ECOSE - Potassium-transporting ATPase potassium-binding subunit OS=Escherichia coli (strain SE11) GN=kdpA PE...	791.0	[0..1]	[557..1]
gi\|115260230, gi... - gi\|116255582\|ref\|YP_771415.1\| potassium-transporting ATPase subunit A [Rhizobium leguminosarum bv. v...	791.0	[0..1]	[556..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQGFLLIA TFLLVLMVLA RPLGSGLARL INDIPLPGTT GVERVLFRAL GVSDREMNWK  60
   61 QYLCAILGLN MLGLAVLFFM LLGQHYLPLN PQQLPGLSWD LALNTAVSFV TNTNWQS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSGETTLSYF SQMAGLTVQN FLSAASGIAV IFALIRAFTR QSMSTLGNAW VDLLRITLWV  60
   61 LVPVALLIAL FFIQQGALQN FLPYQAVNTV EGAQQLLPMG PVASQEAIKM LGTNGGGFFN 120
  121 ANSSHPFENP TALTNFVQML AIFLIPTALC FAFGEVMGDR RQGRMLLWAM SVIFVICVGV 180
  181 V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [299-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAEVQGNPH LLALGTDSSI NMEGKESRFG VLVSSLFAVV TTAASCGAVI AMHDSFTALG  60
   61 GMVPMWLMQI GEVVFGGVGS GLYGMMLFVL LAVFIAGLMI GRTPEYLGKK IDVREMKLTA 120
  121 LAILVTPTLV LMGAALAMMT DAGRSAML

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [447-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPGPHGFSEV LYAVSSAANN NGSAFAGLSA NSPFWNCLLA FCMFVGRFGV IIPVMAIAGS  60
   61 LVSKKSQAAS SGTLPTHGPL FVGLLIGTVL LVGALTFIPA LALGPVAEYL S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits