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View Structure Prediction Details

Protein: Ate1-PB
Organism: Drosophila melanogaster
Length: 484 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ate1-PB.

Description E-value Query
Range
Subject
Range
Ate1-PA - The gene Ate1 is referred to in FlyBase by the symbol Dmel\Ate1 (CG9204, FBgn0025720). It is a prote...
gi|220951876 - gi|220951876|gb|ACL88481.1| Ate1-PA [synthetic construct]
541.0 [0..1] [484..1]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSIVSYYG SQQSKCGYCA GANCSLSHGM HAYQLDCRDY QDLIDRGWRR CGYYCYKLRN  60
   61 QETCCPCYTI KCNGLEFKLS KSNKRILRRI NRFLRDGKRE SKPEAGDGDG EADADYAIVA 120
  121 PEVTASEPQP QLPDKSPPVI NVEQVASLAT AQR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 47.657577
Match: PF04376.4
Description: No description for PF04376.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [154-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPTKQATAAA VEAPTLGSNK SSLLSSSAAA PISNKPCKKA KQMRLDRRLA KLGDSASYST  60
   61 KSLTQEKTLR DFLNTDSETN KHRLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRLIHVYDDE FRRTLPQSFA LYKKYQISIH NDPPKDQDAY KEHLQATPLQ NEKPWDGPEM  60
   61 GYGSFHQQYW LDDKLIAVGV IDILPGCVSS VYFFYDPDYS FLSLGTYGSL REIELVQSLA 120
  121 EKVPSLKYYY MGFYIHSCPK MRYKGKLSPS YLLCPETYEW LP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 92.075721
Match: PF04377.6
Description: No description for PF04377.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [401-484]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTDVIRAKLD EHKYQRLNED PAARDVNEFL MEHLDEVKLL LGGRTRTDYK HFRQLRGTVS  60
   61 DDDIIIEYSK LVGKECARRM LYVK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle