YRC Public Data Repository - Protein Structure Prediction

Protein:	ASTA_ECOLI
Organism:	Escherichia coli
Length:	344 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASTA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192957739, gi... - gi\|75236784\|ref\|ZP_00720855.1\| COG3138: Arginine/ornithine N-succinyltransferase beta subunit [Esche... gi\|75227694, gi\|... - gi\|75227694\|ref\|ZP_00714433.1\| COG3138: Arginine/ornithine N-succinyltransferase beta subunit [Esche... gi\|194428569, gi... - gi\|75210234\|ref\|ZP_00710402.1\| COG3138: Arginine/ornithine N-succinyltransferase beta subunit [Esche... ASTA_ECO24 - Arginine N-succinyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=astA PE=3 SV=... ASTA_SHIFL - Arginine N-succinyltransferase OS=Shigella flexneri GN=astA PE=3 SV=5 ASTA_ECOSE - Arginine N-succinyltransferase OS=Escherichia coli (strain SE11) GN=astA PE=3 SV=1 ASTA_ECO8A - Arginine N-succinyltransferase OS=Escherichia coli O8 (strain IAI1) GN=astA PE=3 SV=1 gi\|24051794, gi\|... - ref\|NP_707365.1\| hypothetical protein SF1479 [Shigella flexneri 2a str. 301], gb\|AAN43072.1\| orf, c... gi\|75256149, gi\|... - gi\|75256149\|ref\|ZP_00727845.1\| COG3138: Arginine/ornithine N-succinyltransferase beta subunit [Esche...	590.0	[0..1]	[344..1]
gi\|194433481, gi... - gi\|83569648\|ref\|ZP_00921099.1\| COG3138: Arginine/ornithine N-succinyltransferase beta subunit [Shige...	590.0	[0..1]	[344..1]
ASTA_SHISS - Arginine N-succinyltransferase OS=Shigella sonnei (strain Ss046) GN=astA PE=3 SV=1	589.0	[0..1]	[344..1]
gi\|56383462, gi\|... - gi\|56479911\|ref\|NP_707365.2\| arginine succinyltransferase [Shigella flexneri 2a str. 301], gi\|563834... gi\|30041236, gi\|... - gi\|30062987\|ref\|NP_837158.1\| arginine succinyltransferase [Shigella flexneri 2a str. 2457T], gi\|3004...	586.0	[0..2]	[344..1]
ASTA_SHIF8 - Arginine N-succinyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=astA PE=3 SV=1	586.0	[0..1]	[344..1]
ASTA_SHIDS - Arginine N-succinyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=astA PE=3 SV=1	586.0	[0..1]	[344..1]
gi\|190907994, gi... - gi\|75241378\|ref\|ZP_00725229.1\| COG3138: Arginine/ornithine N-succinyltransferase beta subunit [Esche... ASTA_ECOL5 - Arginine N-succinyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=astA PE=3 SV=1	586.0	[0..1]	[344..1]
ASTA_ECOUT - Arginine N-succinyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=astA PE=3 SV=1 ASTA_ECO45 - Arginine N-succinyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=astA PE=3 SV=1 ASTA_ECO81 - Arginine N-succinyltransferase OS=Escherichia coli O81 (strain ED1a) GN=astA PE=3 SV=1 ASTA_ECOK1 - Arginine N-succinyltransferase OS=Escherichia coli O1:K1 / APEC GN=astA PE=3 SV=1 gi\|237705697, gi... - gi\|237705697\|ref\|ZP_04536178.1\| arginine succinyltransferase [Escherichia sp. 3_2_53FAA], gi\|2269004...	585.0	[0..1]	[344..1]
ASTA_SHIBS - Arginine N-succinyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=astA PE=3 SV=1	584.0	[0..1]	[344..1]
ASTA_SHIB3 - Arginine N-succinyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=astA P...	583.0	[0..1]	[344..1]

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Predicted Domain #1

Region A:
Residues: [1-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVIRPVERS DVSALMQLAS KTGGGLTSLP ANEATLSARI ERAIKTWQGE LPKSEQGYVF  60
   61 VLEDSETGTV AGICAIEVAV GLNDPWYNYR VGTLVHASKE LNVYNALPTL FLSNDHTGSS 120
  121 ELCTLFLDPD WRKEGNGYLL SKSRFMFMAA FRDKFNDKVV AEMRGVIDEH GYSPFWQSLG 180
  181 KRFFSMDFSR ADFLCGTGQK AFIAELMPKH PIYTHFLSQE AQDVIGQVHP QTAPARAVLE 240
  241 KEGFRYRNYI DIFDGGPTLE CDIDRVRAIR KSRLVEVAEG QPAQGDFPAC LVANENYHHF 300
  301 RVVLVRTDPA TERLILTAAQ LDALKCHAGD RVRLVRLCAE EKTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	136.0
Match:	1yleA
Description:	The structure of arginine/ornithine succinyltransferase subunit AI from Pseudomonas aeruginosa.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
N-acyltransferase activity	3.86250210827155	bayes_pls_golite062009
N-acetyltransferase activity	3.15336081977499	bayes_pls_golite062009
transferase activity, transferring acyl groups	2.81274397387444	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	2.76197390450126	bayes_pls_golite062009
acyltransferase activity	2.70847810129258	bayes_pls_golite062009
catalytic activity	2.34977492703662	bayes_pls_golite062009
arginine N-succinyltransferase activity	2.32623225897353	bayes_pls_golite062009
transferase activity	1.92514630957121	bayes_pls_golite062009
acetyltransferase activity	1.84361284541304	bayes_pls_golite062009
N-succinyltransferase activity	1.14463497125848	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: