YRC Public Data Repository - Protein Structure Prediction

Protein:	ASMA_ECOLI
Organism:	Escherichia coli
Length:	617 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASMA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|187732274, gi... - gi\|75177184\|ref\|ZP_00697282.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	353.0	[0..1]	[617..1]
gi\|193062919, gi... - gi\|75259202\|ref\|ZP_00730550.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	353.0	[0..1]	[617..1]
gi\|218365714, gi... - gi\|218558945\|ref\|YP_002391858.1\| putative assembly protein [Escherichia coli S88], gi\|218365714\|emb\|... gi\|117624261, gi... - gi\|117624261\|ref\|YP_853174.1\| putative assembly protein [Escherichia coli APEC O1], gi\|115513385\|gb\|... gi\|91072927, gi\|... - gi\|91211353\|ref\|YP_541339.1\| putative assembly protein [Escherichia coli UTI89], gi\|91072927\|gb\|ABE0... gi\|237704521, gi... - gi\|237704521\|ref\|ZP_04535002.1\| AsmA protein [Escherichia sp. 3_2_53FAA], gi\|226900887\|gb\|EEH87146.1...	353.0	[0..1]	[617..1]
gi\|73856066, gi\|... - gi\|74312589\|ref\|YP_311008.1\| putative assembly protein [Shigella sonnei Ss046], gi\|73856066\|gb\|AAZ88...	353.0	[0..1]	[617..1]
gi\|24052476, gi\|... - gi\|24113448\|ref\|NP_707958.1\| putative assembly protein [Shigella flexneri 2a str. 301], gi\|24052476\|... gi\|30063513, gi\|... - gi\|30063513\|ref\|NP_837684.1\| putative assembly protein [Shigella flexneri 2a str. 2457T], gi\|3004176...	352.0	[0..1]	[617..1]
gi\|190901098, gi... - gi\|75227911\|ref\|ZP_00714615.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	352.0	[0..1]	[617..1]
gi\|81244851, gi\|... - gi\|82543440\|ref\|YP_407387.1\| putative assembly protein [Shigella boydii Sb227], gi\|81244851\|gb\|ABB65...	352.0	[0..1]	[617..1]
gi\|75236260, gi\|... - gi\|75236260\|ref\|ZP_00720369.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|75210007, gi\|... - gi\|75210007\|ref\|ZP_00710190.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	351.0	[0..1]	[617..1]
gi\|15802546, gi\|... - gi\|15802546\|ref\|NP_288572.1\| suppressor of ompF assembly mutants [Escherichia coli O157:H7 EDL933], ... gi\|25364846 - pir\|\|B85833 suppressor of ompF assembly mutants [imported] - Escherichia coli (strain O157:H7, subst...	351.0	[0..1]	[617..1]
gi\|83571230, gi\|... - gi\|83571230\|ref\|ZP_00922671.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	351.0	[0..1]	[617..1]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFLTTLMI LLVVLVAGLS ALVLLVNPND FRDYMVKQVA ARSGYQLQLD GPLRWHVWPQ  60
   61 LSILSGRMSL TAQGASQPLV RADNMRLDVA LLPLLSHQLS VKQVMLKGAV IQLTPQTEAV 120
  121 RSEDAPVAPR DNTLPDLSDD RGWSFDISSL KVADSVLVFQ H

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.323	N/A	N/A	d.32.1	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View	Download	0.287	N/A	N/A	d.58.26	GHMP Kinase, C-terminal domain
View	Download	0.236	N/A	N/A	d.82.2	Frataxin-like
View	Download	0.229	N/A	N/A	d.32.1	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View	Download	0.222	N/A	N/A	d.110.1	Profilin (actin-binding protein)

Predicted Domain #2

Region A:
Residues: [162-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDDEQVTIRN IRLQMEQDPQ HRGSFEFSGR VNRDQRDLTI SLNGTVDASD YPHDLTAAIE  60
   61 QINWQLQGAD LPKQGIQGQG SFQAQWQESH KRLSFNQISL TANDSTLSGQ AQVTLTEKPE 120
  121 WQLRLQFPQL NLDNLIPLNE TANGENGAAQ QGQSQS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.516	d.109.1	Actin depolymerizing proteins
View	Download	0.446	d.109.1	Actin depolymerizing proteins
View	Download	0.386	d.110.4	SNARE-like
View	Download	0.360	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.351	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3

Predicted Domain #3

Region A:
Residues: [318-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLPRPVISSR IDEPAYQGLQ GFTADILLQA SNVRWRGMNF TDVATQMTNK SGLLEITQLQ  60
   61 GKLNGGQVSL PGTLDATSIN PRINFQPRLE NVEIGTILKA FNYPISLTGK MSLAGDFSGA 120
  121 DIDADAFRHN WQGQAHVEMT DTRMEGM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [465-617]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFQQMIQQAV ERNGGDVKAA ENFDNVTRLD RFTTDLTLKD GVVTLNDMQG QSPVLALTGE  60
   61 GMLNLADQTC DTQFDIRVVG GWNGESKLID FLKETPVPLR VYGNWQQLNY SLQVDQLLRK 120
  121 HLQDEAKRRL NDWAERNKDS RNGKDVKKLL EKM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.642	0.015	periplasmic space	c.61.1	PRTase-like
View	Download	0.494	0.003	periplasmic space	c.59.1	MurD-like peptide ligases, peptide-binding domain
View	Download	0.437	0.002	periplasmic space	d.110.4	SNARE-like
View	Download	0.426	0.001	periplasmic space	c.23.4	Succinyl-CoA synthetase domains
View	Download	0.422	N/A	N/A	a.25.2	Thermoplasma ferritin-like 4-helical bundle

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits