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View Structure Prediction Details

Protein: ARFP_ARATH
Organism: Arabidopsis thaliana
Length: 670 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARFP_ARATH.

Description E-value Query
Range
Subject
Range
gi|7269908, gi|7... - gi|7484815|pir||T08984 auxin response factor 7 homolog F6G3.110 - Arabidopsis thaliana, gi|7269908|e...
675.0 [0..1] [647..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI  60
   61 PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE YGD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEDSNGFESN SEKTPSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYNA EPPVQTILAK  60
   61 DVHGDVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFMRAENGD LCVGIRRAKR 120
  121 GGIGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1widA
Description: Solution Structure of the B3 DNA-Binding Domain of RAV1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [229-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPEYSAGWNP IGGSCGYSSL LREDESNSLR RSNCSLADRK GKVTAESVIE AATLAISGRP  60
   61 FEVVYYPRAS TSEFCVKALD ARAAMRIPWC SGMRFKMAFE TEDSSRISWF MGTVSAVNVS 120
  121 DPIRWPNSPW RLLQVAWDEP DLLQNVKRVN PWLVELVSNV HPIPLTSFSP PRKKMRLPQH 180
  181 PDYNNLINSI PVPSF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [424-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSNPLIRSSP LSSVLDNVPV GLQGARHNAH QYYGLSSSDL HHYYLNRPPP PPPPSSLQLS  60
   61 PSLGLRNIDT KNEKGFCF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [502-670]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTMGTTPCND TKSKKSHIVL FGKLILPEEQ LSEKGSTDTA NIEKTQISSG GSNQNGVAGR  60
   61 EFSSSDEGSP CSKKVHDASG LETGHCKVFM ESDDVGRTLD LSVLGSYEEL SRKLSDMFGI 120
  121 KKSEMLSSVL YRDASGAIKY AGNEPFSEFL KTARRLTILT EQGSESVVV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.967
Match: 1wj6A
Description: Solution structure of RSGI RUH-024, a PB1 domain in human cDNA, KIAA0049
Matching Structure (courtesy of the PDB):

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