YRC Public Data Repository - Protein Structure Prediction

Protein:	ARCL_ECOLI
Organism:	Escherichia coli
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARCL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|41819021, gi\|... - gi\|42527976\|ref\|NP_973074.1\| carbamate kinase [Treponema denticola ATCC 35405], gi\|41819021\|gb\|AAS12...	248.0	[0..1]	[308..1]
gi\|68445984, gi\|... - gi\|70725260\|ref\|YP_252174.1\| carbamate kinase [Staphylococcus haemolyticus JCSC1435], gi\|68445984\|db...	244.0	[0..1]	[310..7]
gi\|170715145, gi... - gi\|170715145\|gb\|EDT27327.1\| carbamate kinase [Clostridium perfringens CPE str. F4969], gi\|168213312\|... gi\|168205667, gi... - gi\|170662780\|gb\|EDT15463.1\| carbamate kinase [Clostridium perfringens E str. JGS1987], gi\|168205667\|... ARCC_CLOPE - Carbamate kinase OS=Clostridium perfringens (strain 13 / Type A) GN=arcC PE=3 SV=2 gi\|110800375, gi... - gi\|110800375\|ref\|YP_694628.1\| carbamate kinase [Clostridium perfringens ATCC 13124], gi\|110675022\|gb... ARCC_CLOPE - Carbamate kinase OS=Clostridium perfringens GN=arcC PE=3 SV=2	241.0	[0..4]	[310..2]
gi\|220931512, gi... - gi\|89210679\|ref\|ZP_01189066.1\| carbamate kinase [Halothermothrix orenii H 168], gi\|89159777\|gb\|EAR79...	239.0	[0..4]	[309..3]
gi\|110682922, gi... - gi\|110802421\|ref\|YP_697497.1\| carbamate kinase [Clostridium perfringens SM101], gi\|110682922\|gb\|ABG8...	237.0	[0..4]	[310..2]
gi\|1321789 - gi\|1321789\|emb\|CAA66367.1\| carbamate kinase [Clostridium perfringens]	237.0	[0..4]	[310..2]
gi\|29894158, gi\|... - gi\|30018617\|ref\|NP_830248.1\| carbamate kinase [Bacillus cereus ATCC 14579], gi\|29894158\|gb\|AAP07449.... gi\|229042263, gi... - gi\|229042263\|ref\|ZP_04190015.1\| Carbamate kinase [Bacillus cereus AH676], gi\|228727054\|gb\|EEL78259.1... gi\|228640233, gi... - gi\|229143152\|ref\|ZP_04271584.1\| Carbamate kinase [Bacillus cereus BDRD-ST24], gi\|228640233\|gb\|EEK966... gi\|228657517, gi... - gi\|229125859\|ref\|ZP_04254884.1\| Carbamate kinase [Bacillus cereus BDRD-Cer4], gi\|228657517\|gb\|EEL133... gi\|229108032, gi... - gi\|229108032\|ref\|ZP_04237658.1\| Carbamate kinase [Bacillus cereus Rock1-15], gi\|228675432\|gb\|EEL3065...	236.0	[0..1]	[310..1]
gi\|152974187, gi... - gi\|89200007\|ref\|ZP_01178763.1\| carbamate kinase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89...	236.0	[0..1]	[310..1]
gi\|42735471, gi\|... - gi\|42779555\|ref\|NP_976802.1\| carbamate kinase [Bacillus cereus ATCC 10987], gi\|42735471\|gb\|AAS39410....	234.0	[0..1]	[310..1]
gi\|206737027, gi... - gi\|206968107\|ref\|ZP_03229063.1\| carbamate kinase [Bacillus cereus AH1134], gi\|206737027\|gb\|EDZ54174.... gi\|75759584, gi\|... - gi\|75759584\|ref\|ZP_00739671.1\| Carbamate kinase [Bacillus thuringiensis serovar israelensis ATCC 356... gi\|228860525, gi... - gi\|228899084\|ref\|ZP_04063356.1\| Carbamate kinase [Bacillus thuringiensis IBL 4222], gi\|228860525\|gb\|... gi\|228963469, gi... - gi\|228963469\|ref\|ZP_04124626.1\| Carbamate kinase [Bacillus thuringiensis serovar sotto str. T04001],... gi\|228808766, gi... - gi\|228950918\|ref\|ZP_04113040.1\| Carbamate kinase [Bacillus thuringiensis serovar kurstaki str. T03a0... gi\|229077719, gi... - gi\|229077719\|ref\|ZP_04210349.1\| Carbamate kinase [Bacillus cereus Rock4-2], gi\|228705660\|gb\|EEL58016... gi\|228714929, gi... - gi\|229068115\|ref\|ZP_04201422.1\| Carbamate kinase [Bacillus cereus F65185], gi\|228714929\|gb\|EEL66797....	234.0	[0..1]	[310..1]

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Predicted Domain #1

Region A:
Residues: [1-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKIVLALG GNALGDDLAG QMKAVKITSQ AIVDLIAQGH EVIVTHGNGP QVGMINQAFE  60
   61 AAAKTEAHSP MLPMSVCVAL SQGYIGYDLQ NALREELLSR GINKPVATLV TQVEVDANDP 120
  121 AFLNPTKPIG SFFTEQEAEQ LTKQGYTLKE DAGRGYRRVV ASPKPVDIIE KETVKALVDA 180
  181 GQVVITVGGG GIPVIREGNH LRGASAVIDK DWASARLAEM IDADMLIILT AVEKVAINFG 240
  241 KENEQWLDRL SLSDAERFIE EGHFAKGSML PKVEAAASFA RSRAGREALI TVLSKAKEGI 300
  301 EGKTGTVICQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.221849
Match:	1b7bA
Description:	Carbamate kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	3.20382750184555	bayes_pls_golite062009
acetylglutamate kinase activity	3.13925315669196	bayes_pls_golite062009
transferase activity	2.54481238004476	bayes_pls_golite062009
phosphotransferase activity, carboxyl group as acceptor	2.52886124192716	bayes_pls_golite062009
carbamate kinase activity	2.05944471594992	bayes_pls_golite062009
amino acid kinase activity	1.9449476322271	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.89315414622708	bayes_pls_golite062009
kinase activity	1.84529070582231	bayes_pls_golite062009
glutamate 5-kinase activity	1.56307954393956	bayes_pls_golite062009
aspartate kinase activity	1.27639507874827	bayes_pls_golite062009
acetyl-CoA:L-glutamate N-acetyltransferase activity	0.81513605844226	bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity	0.242063072825141	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: