YRC Public Data Repository - Protein Structure Prediction

Protein:	ARAG_ECOLI
Organism:	Escherichia coli
Length:	504 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARAG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|242258201, gi... - gi\|242258201\|ref\|ZP_04803027.1\| ABC transporter related protein [Thermoanaerobacter sp. X513], gi\|24... gi\|114843565, gi... - gi\|167038834\|ref\|YP_001661819.1\| ABC transporter related [Thermoanaerobacter sp. X514], gi\|166853074...	497.0	[0..5]	[499..2]
gi\|76587212, gi\|... - gi\|76797422\|ref\|ZP_00779741.1\| ABC transporter related [Thermoanaerobacter ethanolicus ATCC 33223], ... gi\|241882993, gi... - gi\|241904640\|ref\|ZP_04789319.1\| ABC transporter related protein [Thermoanaerobacter brockii subsp. f...	497.0	[0..5]	[499..2]
gi\|223490116, gi... - gi\|254478127\|ref\|ZP_05091510.1\| ABC transporter, ATP-binding protein [Carboxydibrachium pacificum DS... RBSA_CALS4 - Ribose import ATP-binding protein RbsA OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain... RBSA_THETN - Ribose import ATP-binding protein rbsA OS=Thermoanaerobacter tengcongensis GN=rbsA PE=3 SV=1	495.0	[0..5]	[499..2]
RBSA_PECAS - Ribose import ATP-binding protein RbsA OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-6... RBSA_ERWCT - Ribose import ATP-binding protein RbsA OS=Erwinia carotovora subsp. atroseptica GN=rbsA PE=3 SV=1	489.0	[0..5]	[497..2]
RBSA_LACLS - Ribose import ATP-binding protein RbsA OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rbsA P...	484.0	[0..8]	[498..3]
gi\|77977918, gi\|... - gi\|77977918\|ref\|ZP_00833355.1\| COG1129: ABC-type sugar transport system, ATPase component [Yersinia ...	483.0	[0..5]	[497..2]
gi\|255337227, gi... - gi\|255337227\|ref\|ZP_05378108.1\| ABC transporter related protein [Thermoanaerobacter mathranii subsp.... gi\|255254727, gi... - gi\|255254727\|ref\|ZP_05334267.1\| ABC transporter related protein [Thermoanaerobacter italicus Ab9], g... XYLG_THEET - Xylose import ATP-binding protein xylG - Thermoanaerobacter ethanolicus (Clostridium thermohydrosulf... XYLG_THEP3 - Xylose import ATP-binding protein XylG OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 3...	482.0	[0..4]	[498..2]
RBSA_BACLD - Ribose import ATP-binding protein RbsA OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2...	482.0	[0..8]	[498..3]

Back

Predicted Domain #1

Region A:
Residues: [1-504]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQSTPYLSF RGIGKTFPGV KALTDISFDC YAGQVHALMG ENGAGKSTLL KILSGNYAPT  60
   61 TGSVVINGQE MSFSDTTAAL NAGVAIIYQE LHLVPEMTVA ENIYLGQLPH KGGIVNRSLL 120
  121 NYEAGLQLKH LGMDIDPDTP LKYLSIGQWQ MVEIAKALAR NAKIIAFDEP TSSLSAREID 180
  181 NLFRVIRELR KEGRVILYVS HRMEEIFALS DAITVFKDGR YVKTFTDMQQ VDHDALVQAM 240
  241 VGRDIGDIYG WQPRSYGEER LRLDAVKAPG VRTPISLAVR SGEIVGLFGL VGAGRSELMK 300
  301 GMFGGTQITA GQVYIDQQPI DIRKPSHAIA AGMMLCPEDR KAEGIIPVHS VRDNINISAR 360
  361 RKHVLGGCVI NNGWEENNAD HHIRSLNIKT PGAEQLIMNL SGGNQQKAIL GRWLSEEMKV 420
  421 ILLDEPTRGI DVGAKHEIYN VIYALAAQGV AVLFASSDLP EVLGVADRIV VMREGEIAGE 480
  481 LLHEQADERQ ALSLAMPKVS QAVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits