YRC Public Data Repository - Protein Structure Prediction

Protein:	APT_ECOLI
Organism:	Escherichia coli
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|153224177, gi... - gi\|153224177\|ref\|ZP_01954267.1\| adenine phosphoribosyltransferase [Vibrio cholerae MAK 757], gi\|1241... gi\|124123534, gi... - gi\|153800943\|ref\|ZP_01955529.1\| adenine phosphoribosyltransferase [Vibrio cholerae MZO-3], gi\|124123... gi\|153819383, gi... - gi\|153819383\|ref\|ZP_01972050.1\| adenine phosphoribosyltransferase [Vibrio cholerae NCTC 8457], gi\|12... APT_VIBCM - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=apt PE=3 SV=1 gi\|229350943, gi... - gi\|229510978\|ref\|ZP_04400457.1\| adenine phosphoribosyltransferase [Vibrio cholerae B33], gi\|22935094... gi\|150422319, gi... - gi\|254291726\|ref\|ZP_04962512.1\| adenine phosphoribosyltransferase [Vibrio cholerae AM-19226], gi\|197... gi\|229505352, gi... - gi\|229505352\|ref\|ZP_04394862.1\| adenine phosphoribosyltransferase [Vibrio cholerae BX 330286], gi\|22... gi\|153828111, gi... - gi\|153828111\|ref\|ZP_01980778.1\| adenine phosphoribosyltransferase [Vibrio cholerae 623-39], gi\|14887... gi\|229515435, gi... - gi\|229515435\|ref\|ZP_04404894.1\| adenine phosphoribosyltransferase [Vibrio cholerae TMA 21], gi\|22934... gi\|153824955, gi... - gi\|153824955\|ref\|ZP_01977622.1\| adenine phosphoribosyltransferase [Vibrio cholerae MZO-2], gi\|149741... gi\|229518099, gi... - gi\|229518099\|ref\|ZP_04407543.1\| adenine phosphoribosyltransferase [Vibrio cholerae RC9], gi\|22934481... gi\|229339523, gi... - gi\|229523160\|ref\|ZP_04412567.1\| adenine phosphoribosyltransferase [Vibrio cholerae TM 11079-80], gi\|... gi\|229339243, gi... - gi\|229525662\|ref\|ZP_04415067.1\| adenine phosphoribosyltransferase [Vibrio cholerae bv. albensis VL42... gi\|229333630, gi... - gi\|229529856\|ref\|ZP_04419246.1\| adenine phosphoribosyltransferase [Vibrio cholerae 12129(1)], gi\|229... gi\|229608371, gi... - gi\|229608371\|ref\|YP_002879019.1\| adenine phosphoribosyltransferase [Vibrio cholerae MJ-1236], gi\|229... APT_VIBCH - Adenine phosphoribosyltransferase OS=Vibrio cholerae GN=apt PE=3 SV=1 APT_VIBC3 - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogaw... gi\|75822023, gi\|... - gi\|75822023\|ref\|ZP_00751739.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|254226378, gi... - gi\|75818312\|ref\|ZP_00748493.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... APT_VIBCH - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N... gi\|116188739, gi... - gi\|75829889\|ref\|ZP_00759179.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|153217530, gi... - gi\|153217530\|ref\|ZP_01951211.1\| adenine phosphoribosyltransferase [Vibrio cholerae 1587], gi\|1241135...	193.0	[0..3]	[183..1]
gi\|15157388, gi\|... - gi\|15889512\|ref\|NP_355193.1\| adenine phosphoribosyltransferase [Agrobacterium tumefaciens str. C58],... gi\|25286869 - gi\|25286869\|pir\|\|A97628 adenine phosphoribosyltransferase (AF109172) [imported] - Agrobacterium tume...	192.0	[0..11]	[183..26]
gi\|117622726, gi... - gi\|117622726\|ref\|YP_851639.1\| adenine phosphoribosyltransferase [Escherichia coli APEC O1], gi\|11551... gi\|1773151 - gi\|1773151\|gb\|AAB40223.1\| adenine phosphoribosyltransferase [Escherichia coli]	192.0	[0..1]	[183..12]
APT_YERP3 - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=... APT_YERPY - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=apt ... APT_YERPB - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=apt P...	192.0	[0..2]	[183..6]
APT_YERPS - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis GN=apt PE=3 SV=1 APT_YERPS - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=apt ...	192.0	[0..2]	[183..6]
gi\|149365028, gi... - gi\|149365028\|ref\|ZP_01887063.1\| adenine phosphoribosyltransferase [Yersinia pestis CA88-4125], gi\|14... gi\|89104116, gi\|... - gi\|89104116\|ref\|ZP_01176669.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... APT_YERPP - Adenine phosphoribosyltransferase OS=Yersinia pestis (strain Pestoides F) GN=apt PE=3 SV=1 gi\|21957808, gi\|... - gi\|22124966\|ref\|NP_668389.1\| adenine phosphoribosyltransferase [Yersinia pestis KIM], gi\|21957808\|gb... APT_YERPA - Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=apt PE=3 SV=1 APT_YERPN - Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=apt PE=3 SV=1 gi\|16123288, gi\|... - gi\|218930156\|ref\|YP_002348031.1\| adenine phosphoribosyltransferase [Yersinia pestis CO92], gi\|161232... gi\|45435513, gi\|... - gi\|45440655\|ref\|NP_992194.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Microtus str.... APT_YERPG - Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=apt PE=3 SV=1 gi\|167051059, gi... - gi\|167398555\|ref\|ZP_02304079.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Antiqua st... gi\|166205724, gi... - gi\|166212937\|ref\|ZP_02238972.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Antiqua st... gi\|167057291, gi... - gi\|167423121\|ref\|ZP_02314874.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Mediaevali... gi\|167422744, gi... - gi\|167422744\|ref\|ZP_02314497.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Orientalis... APT_YERPE - Adenine phosphoribosyltransferase OS=Yersinia pestis GN=apt PE=3 SV=1 gi\|167470064 - gi\|167470064\|ref\|ZP_02334768.1\| adenine phosphoribosyltransferase [Yersinia pestis FV-1] gi\|165990046, gi... - gi\|166011046\|ref\|ZP_02231944.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Antiqua st... gi\|165927630, gi... - gi\|165927630\|ref\|ZP_02223462.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Orientalis... gi\|229838723, gi... - gi\|229838723\|ref\|ZP_04458882.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Orientalis... gi\|229896120, gi... - gi\|229896120\|ref\|ZP_04511290.1\| adenine phosphoribosyltransferase [Yersinia pestis Pestoides A], gi\|... gi\|229899291, gi... - gi\|229899291\|ref\|ZP_04514434.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Orientalis...	191.0	[0..2]	[183..6]
APT_SHIFL - Adenine phosphoribosyltransferase OS=Shigella flexneri GN=apt PE=3 SV=2 APT_SHIF8 - Adenine phosphoribosyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=apt PE=3 SV=1 gi\|56383220, gi\|... - gi\|56479669\|ref\|NP_706362.2\| adenine phosphoribosyltransferase [Shigella flexneri 2a str. 301], gi\|5... gi\|30061969, gi\|... - gi\|30061969\|ref\|NP_836140.1\| adenine phosphoribosyltransferase [Shigella flexneri 2a str. 2457T], gi...	191.0	[0..1]	[183..1]
gi\|83570197, gi\|... - gi\|83570197\|ref\|ZP_00921643.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	191.0	[0..1]	[183..1]
gi\|121728162, gi... - gi\|75816264\|ref\|ZP_00746739.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	191.0	[0..3]	[183..1]
gi\|195631956, gi... - gi\|195631956\|gb\|EDX50476.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enterica s... gi\|205349726, gi... - gi\|205349726\|gb\|EDZ36357.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enterica s... gi\|168237600, gi... - gi\|197289572\|gb\|EDY28935.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enterica s... gi\|205333972, gi... - gi\|205333972\|gb\|EDZ20736.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enterica s... APT_SALSV - Adenine phosphoribosyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=apt PE=3 SV=1 gi\|194470864, gi... - gi\|194470864\|ref\|ZP_03076848.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enteri... APT_SALNS - Adenine phosphoribosyltransferase OS=Salmonella newport (strain SL254) GN=apt PE=3 SV=1 APT_SALPA - Adenine phosphoribosyltransferase OS=Salmonella paratyphi A GN=apt PE=3 SV=1 gi\|168818900, gi... - gi\|205344266\|gb\|EDZ31030.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enterica s... APT_SALPA - Adenine phosphoribosyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=apt PE=3 ... gi\|167990470, gi... - gi\|205331017\|gb\|EDZ17781.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enterica s... gi\|167550990, gi... - gi\|205324197\|gb\|EDZ12036.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enterica s... APT_SALPB - Adenine phosphoribosyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=apt PE=... gi\|238911387 - gi\|238911387\|ref\|ZP_04655224.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enteri... APT_SALDC - Adenine phosphoribosyltransferase OS=Salmonella dublin (strain CT_02021853) GN=apt PE=3 SV=1 APT_SALPK - Adenine phosphoribosyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=apt PE=3 SV=1 gi\|197263071, gi... - gi\|197263071\|ref\|ZP_03163145.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enteri... APT_SALA4 - Adenine phosphoribosyltransferase OS=Salmonella agona (strain SL483) GN=apt PE=3 SV=1 APT_SALPC - Adenine phosphoribosyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=apt PE=3 SV=1 APT_SALEP - Adenine phosphoribosyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=apt PE=3 SV=1 APT_SALTY - Adenine phosphoribosyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN... gi\|204930455, gi... - gi\|204930455\|ref\|ZP_03221385.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enteri... gi\|200390706, gi... - gi\|200390706\|ref\|ZP_03217317.1\| adenine phosphoribosyltransferase [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=apt] [protein=adenine phosphoribosyltransferase] [protein_id=YP_005236181.1] [location=540936.... APT_SALTY - Adenine phosphoribosyltransferase OS=Salmonella typhimurium GN=apt PE=3 SV=1 APT_SALTY - Adenine phosphoribosyltransferase OS=Salmonella typhimurium GN=apt PE=3 SV=1 APT_SALPB - Adenine phosphoribosyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=apt PE=... APT_SALCH - Adenine phosphoribosyltransferase OS=Salmonella choleraesuis GN=apt PE=3 SV=1 APT_SALCH - Adenine phosphoribosyltransferase OS=Salmonella choleraesuis GN=apt PE=3 SV=1 APT_SALCH - Adenine phosphoribosyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=apt PE=3 SV=1	191.0	[0..1]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATAQQLEY LKNSIKSIQD YPKPGILFRD VTSLLEDPKA YALSIDLLVE RYKNAGITKV  60
   61 VGTEARGFLF GAPVALGLGV GFVPVRKPGK LPRETISETY DLEYGTDQLE IHVDAIKPGD 120
  121 KVLVVDDLLA TGGTIEATVK LIRRLGGEVA DAAFIINLFD LGGEQRLEKQ GITSYSLVPF 180
  181 PGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	2dy0A
Description:	No description for 2dy0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits