YRC Public Data Repository - Protein Structure Prediction

Protein:	APPC_ECOLI
Organism:	Escherichia coli
Length:	514 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APPC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15641846, gi\|... - gi\|9656372\|gb\|AAF94992.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio cholerae O1 biovar El To... gi\|229370275, gi... - gi\|229607620\|ref\|YP_002878268.1\| cytochrome d ubiquinol oxidase subunit I [Vibrio cholerae MJ-1236],... gi\|229518841, gi... - gi\|229518841\|ref\|ZP_04408284.1\| cytochrome d ubiquinol oxidase subunit I [Vibrio cholerae RC9], gi\|2... gi\|229351667, gi... - gi\|229511702\|ref\|ZP_04401181.1\| cytochrome d ubiquinol oxidase subunit I [Vibrio cholerae B33], gi\|2... gi\|121591341, gi... - gi\|121591341\|ref\|ZP_01678629.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio cholerae 2740-80],... gi\|229508059, gi... - gi\|229508059\|ref\|ZP_04397564.1\| cytochrome d ubiquinol oxidase subunit I [Vibrio cholerae BX 330286]... gi\|75830159, gi\|... - gi\|75830159\|ref\|ZP_00759442.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Vibrio cholera... gi\|153225631, gi... - gi\|153225631\|ref\|ZP_01954817.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio cholerae MAK 757],... gi\|227081973, gi... - gi\|227081973\|ref\|YP_002810524.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio cholerae M66-2], ... gi\|75827169, gi\|... - gi\|75827169\|ref\|ZP_00756604.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Vibrio cholera... gi\|75814782, gi\|... - gi\|75814782\|ref\|ZP_00745333.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Vibrio cholera... gi\|11280222 - pir\|\|E82149 cytochrome d ubiquinol oxidase, chain I VC1844 [similarity] - Vibrio cholerae (strain N1...	654.0	[0..1]	[514..14]
gi\|91188505, gi\|... - gi\|91227612\|ref\|ZP_01261916.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio alginolyticus 12G01...	652.0	[0..1]	[513..1]
gi\|75853720, gi\|... - gi\|75853720\|ref\|ZP_00761496.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Vibrio sp. Ex2...	652.0	[0..1]	[513..1]
gi\|28806040, gi\|... - gi\|28897827\|ref\|NP_797432.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio parahaemolyticus RIMD... gi\|28806040 - gi\|28806040\|dbj\|BAC59316.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio parahaemolyticus RIMD ...	652.0	[0..1]	[513..11]
gi\|27361640, gi\|... - gi\|27365492\|ref\|NP_761020.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio vulnificus CMCP6], gi...	647.0	[0..1]	[513..1]
gi\|37199215, gi\|... - gi\|37680467\|ref\|NP_935076.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio vulnificus YJ016], gi...	647.0	[0..1]	[513..11]
gi\|197317797, gi... - gi\|197336307\|ref\|YP_002155716.1\| cytochrome D ubiquinol oxidase subunit 1 [Vibrio fischeri MJ11], gi... gi\|59479661, gi\|... - gi\|59711560\|ref\|YP_204336.1\| cytochrome d terminal oxidase, subunit I [Vibrio fischeri ES114], gi\|59...	646.0	[0..3]	[513..4]
gi\|85835748, gi\|... - gi\|86146485\|ref\|ZP_01064808.1\| Cytochrome d ubiquinol oxidase, subunit I [Vibrio sp. MED222], gi\|858...	646.0	[0..1]	[513..1]
gi\|84388521, gi\|... - gi\|84388521\|ref\|ZP_00991068.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio splendidus 12B01], ...	644.0	[0..1]	[513..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWDVIDLSRW QFALTALYHF LFVPLTLGLI FLLAIMETIY VVTGKTIYRD MTRFWGKLFG  60
   61 INFALGVATG LTMEFQFGTN WSFYSNYVGD IFGAPLAMEA LMAFFLESTF VGLFFFGWQR 120
  121 LNKYQHLLVT WLVAFGSNLS ALWILNANGW MQYP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGAHFDIDTL RMEMTSFSEL VFNPVSQVKF VHTVMAGYVT GAMFIMAISA WYLLRGRERN  60
   61 VALRSFAIGS VFGTLAIIGT LQLGDSSAYE VAQVQPVKLA AMEGEWQT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [263-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPAPAPFHVV AWPEQDQERN AFALKIPALL GILATHSLDK PVPGLKNLMA ETYPRLQRGR  60
   61 MAWLLMQEIS QGNREPHVLQ AFRGLEGDLG YGMLLSRYAP DMNHVTAAQY QAAMRGAIPQ 120
  121 VAPVFWSFRI MVGCGSLLLL VMLIALVQTL RGKIDQHRWV LKMALWSLPL PWIAIEAGWF 180
  181 MTEFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [448-514]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQPWAIQDIL PTYSAHSALT TGQLAFSLIM IVGLYTLFLI AEVYLMQKYA RLGPSAMQSE  60
   61 QPTQQQG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits