YRC Public Data Repository - Protein Structure Prediction

Protein:	APBE_ECOLI
Organism:	Escherichia coli
Length:	351 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APBE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24113599, gi\|... - gi\|24113599\|ref\|NP_708109.1\| thiamine biosynthesis lipoprotein ApbE [Shigella flexneri 2a str. 301],... gi\|30041906, gi\|... - gi\|30063653\|ref\|NP_837824.1\| thiamine biosynthesis lipoprotein ApbE [Shigella flexneri 2a str. 2457T... gi\|81245963, gi\|... - gi\|82544552\|ref\|YP_408499.1\| thiamine biosynthesis lipoprotein ApbE [Shigella boydii Sb227], gi\|8124...	433.0	[0..1]	[351..1]
gi\|187730105, gi... - gi\|75176155\|ref\|ZP_00696313.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	433.0	[0..1]	[351..1]
gi\|26109007, gi\|... - gi\|26248602\|ref\|NP_754642.1\| thiamine biosynthesis lipoprotein ApbE [Escherichia coli CFT073], gi\|26... gi\|218690377, gi... - gi\|218690377\|ref\|YP_002398589.1\| thiamine biosynthesis lipoprotein ApbE [Escherichia coli ED1a], gi\|... gi\|227887272, gi... - gi\|227887272\|ref\|ZP_04005077.1\| thiamine biosynthesis lipoprotein ApbE [Escherichia coli 83972], gi\|...	433.0	[0..1]	[351..1]
gi\|193068121, gi... - gi\|75238011\|ref\|ZP_00722016.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	432.0	[0..1]	[351..1]
gi\|110806188, gi... - gi\|110806188\|ref\|YP_689708.1\| thiamine biosynthesis lipoprotein ApbE [Shigella flexneri 5 str. 8401]...	432.0	[0..1]	[351..1]
gi\|193062456, gi... - gi\|75259687\|ref\|ZP_00730989.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	432.0	[0..1]	[351..1]
gi\|117624408, gi... - gi\|117624408\|ref\|YP_853321.1\| thiamine biosynthesis lipoprotein ApbE [Escherichia coli APEC O1], gi\|... gi\|218365901, gi... - gi\|218559132\|ref\|YP_002392045.1\| thiamine biosynthesis lipoprotein ApbE [Escherichia coli S88], gi\|2... gi\|226901055, gi... - gi\|237704689\|ref\|ZP_04535170.1\| thiamine biosynthesis lipoprotein ApbE [Escherichia sp. 3_2_53FAA], ...	431.0	[0..1]	[351..1]
gi\|82776182, gi\|... - gi\|82776182\|ref\|YP_402531.1\| thiamine biosynthesis lipoprotein ApbE [Shigella dysenteriae Sd197], gi...	431.0	[0..1]	[351..1]
gi\|194414822, gi... - gi\|75211631\|ref\|ZP_00711710.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	430.0	[0..1]	[351..1]
gi\|91211507, gi\|... - gi\|91211507\|ref\|YP_541493.1\| thiamine biosynthesis lipoprotein ApbE [Escherichia coli UTI89], gi\|910...	430.0	[0..1]	[351..1]

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Predicted Domain #1

Region A:
Residues: [1-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISFTRVAL LAAALFFVGC DQKPQPAKTH ATEVTVLEGK TMGTFWRASI PGIDAKRSAE  60
   61 LKEKIQTQLD ADDQLLSTYK KDSALMRFND SQSLSPWPVS EAMADIVTTS LRIGAKTDGA 120
  121 MDITVGPLVN LWGFGPEQQP VQIPSQEQID AMKAKTGLQH LTVINQSHQQ YLQKDLPDLY 180
  181 VDLSTVGEGY AADHLARLME QEGISRYLVS VGGALNSRGM NGEGLPWRVA IQKPTDKENA 240
  241 VQAVVDINGH GISTSGSYRN YYELDGKRLS HVIDPQTGRP IEHNLVSVTV IAPTALEADA 300
  301 WDTGLMVLGP EKAKEVVRRE GLAVYMITKE GDSFKTWMSP QFKSFLVSEK N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	2o18A
Description:	No description for 2o18A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits