YRC Public Data Repository - Protein Structure Prediction

Protein:	AMPE_ECOLI
Organism:	Escherichia coli
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMPE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110681960, gi... - gi\|110801459\|ref\|YP_698435.1\| cobalamin biosynthesis protein [Clostridium perfringens SM101], gi\|110...	243.0	[0..4]	[254..2]
gi\|28202879, gi\|... - gi\|28210442\|ref\|NP_781386.1\| cobalamin biosynthesis protein [Clostridium tetani E88], gi\|28202879\|gb...	242.0	[0..1]	[276..16]
COBD_CLOPE - Cobalamin biosynthesis protein CobD OS=Clostridium perfringens (strain 13 / Type A) GN=cobD PE=3 SV=... COBD_CLOPE - Cobalamin biosynthesis protein CobD OS=Clostridium perfringens GN=cobD PE=3 SV=1	241.0	[0..4]	[254..2]
gi\|77381874, gi\|... - gi\|77457871\|ref\|YP_347376.1\| cobalamin biosynthesis protein [Pseudomonas fluorescens Pf0-1], gi\|7738...	241.0	[0..17]	[276..18]
COBD_CLOTE - Cobalamin biosynthesis protein CobD OS=Clostridium tetani (strain Massachusetts / E88) GN=cobD PE=3 ... COBD_CLOTE - Cobalamin biosynthesis protein CobD OS=Clostridium tetani GN=cobD PE=3 SV=2	240.0	[0..1]	[276..1]
gi\|95109557, gi\|... - gi\|95109557\|emb\|CAK14258.1\| putative cobalamin biosynthesis protein CobD [Pseudomonas entomophila L4... gi\|95109557 - gi\|95109557\|emb\|CAK14258.1\| putative cobalamin biosynthesis protein CobD [Pseudomonas entomophila L4...	239.0	[0..1]	[276..1]
gi\|110800617, gi... - gi\|110800617\|ref\|YP_695740.1\| cobalamin biosynthesis protein [Clostridium perfringens ATCC 13124], g...	239.0	[0..4]	[254..2]
gi\|255094383 - gi\|255094383\|ref\|ZP_05323861.1\| cobalamin biosynthesis protein [Clostridium difficile CIP 107932] gi\|255316135 - gi\|255316135\|ref\|ZP_05357718.1\| cobalamin biosynthesis protein [Clostridium difficile QCD-76w55] gi\|255518797 - gi\|255518797\|ref\|ZP_05386473.1\| cobalamin biosynthesis protein [Clostridium difficile QCD-97b34] gi\|255651975 - gi\|255651975\|ref\|ZP_05398877.1\| cobalamin biosynthesis protein [Clostridium difficile QCD-37x79] gi\|254977055 - gi\|254977055\|ref\|ZP_05273527.1\| cobalamin biosynthesis protein [Clostridium difficile QCD-66c26] gi\|145952585, gi... - gi\|90572871\|ref\|ZP_01229393.1\| hypothetical protein CdifQ_02003778 [Clostridium difficile QCD-32g58]...	239.0	[0..1]	[254..1]
gi\|28868917, gi\|... - gi\|28868917\|ref\|NP_791536.1\| cobalamin biosynthesis protein [Pseudomonas syringae pv. tomato str. DC... tr\|Q885X0\|Q885X0... - Cobalamin biosynthesis protein CobD OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=cobD PE=3 ...	239.0	[0..1]	[276..1]
gi\|126701056, gi... - gi\|126701056\|ref\|YP_001089953.1\| cobalamin biosynthesis protein [Clostridium difficile 630], gi\|1152...	238.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFTTLLVL IFERLFKLGE HWQLDHRLEA FFRRVKHFSL GRTLGMTIIA MGVTFLLLRA  60
   61 LQGVLFNVPT LLVWLLIGLL CIGAGKVRLH YHAYLTAASR NDSHARATMA GELTMIHGVP 120
  121 AGCDEREYLR ELQNALLWIN FRFYLAPLFW LIVGGTWGPV TLMGYAFLRA WQYWLARYQT 180
  181 PHHRLQSGID AVLHVLDWVP VRLAGVVYAL IGHGEKALPA WFASLGDFHT SQYQVLTRLA 240
  241 QFSLAREPHV DKVETPKAAV SMAKKTSFVV VVVIALLTIY GALV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits