YRC Public Data Repository - Protein Structure Prediction

Protein:	ALX_ECOLI
Organism:	Escherichia coli
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|213859672 - gi\|213859672\|ref\|ZP_03385376.1\| drug efflux protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213584058 - gi\|213584058\|ref\|ZP_03365884.1\| drug efflux protein [Salmonella enterica subsp. enterica serovar Typ... gi\|29143483, gi\|... - gi\|29143483\|ref\|NP_806825.1\| drug efflux protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213427201 - gi\|213427201\|ref\|ZP_03359951.1\| drug efflux protein [Salmonella enterica subsp. enterica serovar Typ... gi\|16761996 - gi\|16761996\|ref\|NP_457613.1\| drug efflux protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|214001007 - gi\|214001007\|ref\|ZP_03411742.1\| drug efflux protein [Salmonella enterica subsp. enterica serovar Typ... ALX_SALTI - Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1 ALX_SALTI - Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1	256.0	[0..1]	[318..1]
gi\|238799368, gi... - gi\|77960018\|ref\|ZP_00823920.1\| COG0861: Membrane protein TerC, possibly involved in tellurium resist...	256.0	[0..1]	[320..2]
gi\|205354137, gi... - gi\|205354137\|ref\|YP_002227938.1\| possible drug efflux protein [Salmonella enterica subsp. enterica s... ALX_SALTY - Inner membrane protein alx OS=Salmonella typhimurium GN=alx PE=3 SV=1 gi\|206710284, gi... - gi\|207858481\|ref\|YP_002245132.1\| possible drug efflux protein [Salmonella enterica subsp. enterica s... gi\|224585027, gi... - gi\|224585027\|ref\|YP_002638826.1\| possible drug efflux protein [Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=ygjT] [protein=putative tellurite resistance protein] [protein_id=YP_005239403.1] [location=34... gi\|197264853, gi... - gi\|197264853\|ref\|ZP_03164927.1\| inner membrane protein alx [Salmonella enterica subsp. enterica sero... gi\|197936656, gi... - gi\|198242140\|ref\|YP_002217205.1\| inner membrane protein alx [Salmonella enterica subsp. enterica ser... gi\|200388272, gi... - gi\|200388272\|ref\|ZP_03214884.1\| inner membrane protein alx [Salmonella enterica subsp. enterica sero... gi\|204322486, gi... - gi\|204928164\|ref\|ZP_03219364.1\| inner membrane protein alx [Salmonella enterica subsp. enterica sero... gi\|167990217, gi... - gi\|205331095\|gb\|EDZ17859.1\| inner membrane protein alx [Salmonella enterica subsp. enterica serovar ... gi\|168243058, gi... - gi\|205337891\|gb\|EDZ24655.1\| inner membrane protein alx [Salmonella enterica subsp. enterica serovar ... gi\|205343369, gi... - gi\|205343369\|gb\|EDZ30133.1\| inner membrane protein alx [Salmonella enterica subsp. enterica serovar ... ALX_SALTY - Inner membrane protein alx OS=Salmonella typhimurium GN=alx PE=3 SV=1 gi\|194449030, gi... - gi\|194449030\|ref\|YP_002047261.1\| inner membrane protein alx [Salmonella enterica subsp. enterica ser... gi\|62129374, gi\|... - gi\|62181741\|ref\|YP_218158.1\| putative resistance protein [Salmonella enterica subsp. enterica serova... gi\|238910026 - gi\|238910026\|ref\|ZP_04653863.1\| possible drug efflux protein [Salmonella enterica subsp. enterica se... ALX_SALTY - Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alx PE...	256.0	[0..1]	[318..1]
gi\|56129420, gi\|... - gi\|56415163\|ref\|YP_152238.1\| drug efflux protein [Salmonella enterica subsp. enterica serovar Paraty... gi\|197095570, gi... - gi\|197364093\|ref\|YP_002143730.1\| possible drug efflux protein [Salmonella enterica subsp. enterica s...	255.0	[0..1]	[318..1]
gi\|157156139, gi... - gi\|75187896\|ref\|ZP_00701163.1\| COG0861: Membrane protein TerC, possibly involved in tellurium resist...	255.0	[0..1]	[320..1]
gi\|157162564, gi... - gi\|75197040\|ref\|ZP_00707110.1\| COG0861: Membrane protein TerC, possibly involved in tellurium resist...	254.0	[0..1]	[320..1]
gi\|116696037, gi... - gi\|116696037\|ref\|YP_841613.1\| tellurium resistance protein TerC [Ralstonia eutropha H16], gi\|1135305...	254.0	[0..1]	[314..1]
gi\|30064431, gi\|... - gi\|30064431\|ref\|NP_838602.1\| putative transport protein [Shigella flexneri 2a str. 2457T], gi\|300426... gi\|194420072, gi... - gi\|194431716\|ref\|ZP_03064007.1\| protein Alx [Shigella dysenteriae 1012], gi\|194420072\|gb\|EDX36150.1\|... gi\|110806970, gi... - gi\|110806970\|ref\|YP_690490.1\| putative transport protein [Shigella flexneri 5 str. 8401], gi\|1106165... gi\|194439806, gi... - gi\|83584810\|ref\|ZP_00923471.1\| COG0861: Membrane protein TerC, possibly involved in tellurium resist... gi\|209913818, gi... - gi\|209920559\|ref\|YP_002294643.1\| putative transport protein [Escherichia coli SE11], gi\|209913818\|db... gi\|74313518, gi\|... - gi\|74313518\|ref\|YP_311937.1\| putative transport protein [Shigella sonnei Ss046], gi\|73856995\|gb\|AAZ8... gi\|218701859, gi... - gi\|218701859\|ref\|YP_002409488.1\| conserved hypothetical protein; putative inner membrane protein, pa... gi\|253323120, gi... - gi\|254289784\|ref\|YP_003055532.1\| predicted inner membrane protein, part of terminus [Escherichia col... gi\|253974935, gi... - gi\|254163034\|ref\|YP_003046142.1\| predicted inner membrane protein, part of terminus [Escherichia col...	254.0	[0..1]	[320..1]
gi\|81246755, gi\|... - gi\|82545344\|ref\|YP_409291.1\| putative transport protein [Shigella boydii Sb227], gi\|81246755\|gb\|ABB6...	254.0	[0..1]	[320..1]
gi\|75176063, gi\|... - gi\|75176063\|ref\|ZP_00696231.1\| COG0861: Membrane protein TerC, possibly involved in tellurium resist...	254.0	[0..1]	[320..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVGTPLLW GGFAVVVAIM LAIDLLLQGR RGAHAMTMKQ AAAWSLVWVT LSLLFNAAFW  60
   61 WYLVQTEGRA VADPQALAFL TGYLIEKSLA VDNVFVWLML FSYFSVPAAL QRRVLVYGVL 120
  121 GAIVLRTIMI FTGSWLISQF DWILYIFGAF LLFTGVKMAL AHEDESGIGD KPLVRWLRGH 180
  181 LRMTDTIDNE HF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.769551
Match:	PF03741.7
Description:	No description for PF03741.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [193-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVRKNGLLYA TPLMLVLILV ELSDVIFAVD SIPAIFAVTT DPFIVLTSNL FAILGLRAMY  60
   61 FLLAGVAERF SMLKYGLAVI LVFIGIKMLI VDFYHIPIAV SLGVVFGILV MTFIINAWVN 120
  121 YRHDKQRGG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits