YRC Public Data Repository - Protein Structure Prediction

Protein:	ALSK_ECOLI
Organism:	Escherichia coli
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALSK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|149906168, gi... - gi\|82749522\|ref\|ZP_00911971.1\| Glucokinase ROK [Clostridium beijerincki NCIMB 8052], gi\|82722611\|gb\|...	232.0	[0..6]	[297..3]
gi\|20808365 - gi\|20808365\|ref\|NP_623536.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478419, gi... - gi\|254478419\|ref\|ZP_05091797.1\| ROK family protein (putative glucokinase) [Carboxydibrachium pacific... gi\|20808365, gi\|... - gi\|20808365\|ref\|NP_623536.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20...	227.0	[0..7]	[295..1]
gi\|29377260, gi\|... - gi\|29377260\|ref\|NP_816414.1\| glucokinase [Enterococcus faecalis V583], gi\|29344726\|gb\|AAO82484.1\| gl... gi\|227176559, gi... - gi\|227554269\|ref\|ZP_03984316.1\| glucokinase [Enterococcus faecalis HH22], gi\|227176559\|gb\|EEI57531.1...	227.0	[0..6]	[298..3]
gi\|28202432, gi\|... - gi\|28209997\|ref\|NP_780941.1\| transcriptional repressor [Clostridium tetani E88], gi\|28202432\|gb\|AAO3...	226.0	[0..1]	[297..1]
gi\|15674005, gi\|... - gi\|15674005\|ref\|NP_268180.1\| glucokinase [Lactococcus lactis subsp. lactis Il1403], gi\|12725071\|gb\|A... gi\|25298212 - pir\|\|G86877 glucokinase (EC 2.7.1.2) [imported] - Lactococcus lactis subsp. lactis (strain IL1403)	224.0	[0..5]	[298..3]
gi\|52082567, gi\|... - gi\|52787962\|ref\|YP_093791.1\| hypothetical protein BLi04285 [Bacillus licheniformis ATCC 14580], gi\|5...	224.0	[0..1]	[305..75]
gi\|116108624, gi... - gi\|62462158\|ref\|ZP_00381619.1\| COG1940: Transcriptional regulator/sugar kinase [Lactococcus lactis s...	223.0	[0..5]	[298..3]
gi\|241884329, gi... - gi\|241903263\|ref\|ZP_04787989.1\| glucokinase, ROK family [Thermoanaerobacter brockii subsp. finnii Ak... gi\|76796780, gi\|... - gi\|76796780\|ref\|ZP_00779133.1\| Glucokinase ROK [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587...	223.0	[0..7]	[295..1]
gi\|89210474, gi\|... - gi\|89210474\|ref\|ZP_01188863.1\| ROK [Halothermothrix orenii H 168], gi\|89159917\|gb\|EAR79576.1\| ROK [H...	221.0	[0..1]	[299..77]
gi\|18309063, gi\|... - gi\|18309063\|ref\|NP_560997.1\| glucose kinase [Clostridium perfringens str. 13], gi\|18143738\|dbj\|BAB79... gi\|110803732, gi... - gi\|110803732\|ref\|YP_697435.1\| glucose kinase [Clostridium perfringens SM101], gi\|110684233\|gb\|ABG876... gi\|110800941, gi... - gi\|110800941\|ref\|YP_694540.1\| putative glucokinase [Clostridium perfringens ATCC 13124], gi\|11067558... gi\|170713418, gi... - gi\|170713418\|gb\|EDT25600.1\| putative glucokinase [Clostridium perfringens CPE str. F4969], gi\|168215... gi\|182379664, gi... - gi\|182379664\|gb\|EDT77143.1\| putative glucokinase [Clostridium perfringens NCTC 8239], gi\|168218326\|r... gi\|177908784, gi... - gi\|182625977\|ref\|ZP_02953741.1\| putative glucokinase [Clostridium perfringens D str. JGS1721], gi\|17... gi\|170660588, gi... - gi\|170660588\|gb\|EDT13271.1\| putative glucokinase [Clostridium perfringens E str. JGS1987], gi\|168208... gi\|170710474, gi... - gi\|170710474\|gb\|EDT22656.1\| putative glucokinase [Clostridium perfringens B str. ATCC 3626], gi\|1682...	221.0	[0..7]	[297..4]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKQHNVVAG VDMGATHIRF CLRTAEGETL HCEKKRTAEV IAPGLVSGIG EMIDEQLRRF  60
   61 NARCHGLVMG FPALVSKDKR TIISTPNLPL TAADLYDLAD KLENTLNCPV EFSRDVNLQL 120
  121 SWDVVENRLT QQLVLAAYLG TGMGFAVWMN GAPWTGAHGV AGELGHIPLG DMTQHCACGN 180
  181 PGCLETNCSG MALRRWYEQQ PRNYPLRDLF VHAENAPFVQ SLLENAARAI ATSINLFDPD 240
  241 AVILGGGVMD MPAFPRETLV AMTQKYLRRP LPHQVVRFIA ASSSDFNGAQ GAAILAHQRF 300
  301 LPQFCAKAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.522879
Match:	2qm1A
Description:	No description for 2qm1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits