YRC Public Data Repository - Protein Structure Prediction

Protein:	ALPA_ECOLI
Organism:	Escherichia coli
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|113888707, gi... - gi\|114047265\|ref\|YP_737815.1\| phage transcriptional regulator, AlpA [Shewanella sp. MR-7], gi\|113888...	88.0	[0..2]	[66..3]
gi\|195957610 - gi\|195957610\|gb\|ACG59719.1\| putative transcriptional regulator [Escherichia coli] gi\|240119365, gi... - gi\|240119365\|dbj\|BAH79228.1\| predicted transcriptional regulator [Escherichia coli O157:H7], gi\|1959... gi\|218355396, gi... - gi\|218547855\|ref\|YP_002381646.1\| conserved hypothetical protein of bacteriophage origin, putative CO... gi\|192955764, gi... - gi\|193070910\|ref\|ZP_03051841.1\| transcriptional regulator, AlpA family [Escherichia coli E110019], g... gi\|124528022, gi... - gi\|124528022\|ref\|ZP_01699375.1\| phage transcriptional regulator, AlpA [Escherichia coli B], gi\|12450... gi\|1589630 - gi\|1589630\|prf\|\|2211375A vis gene gi\|93825 - pir\|\|G42465 hypothetical protein 88 - phage phi-R73 gi\|190909146, gi... - gi\|191170338\|ref\|ZP_03031891.1\| transcriptional regulator, AlpA family [Escherichia coli F11], gi\|19... gi\|81247888, gi\|... - gi\|82546477\|ref\|YP_410424.1\| hypothetical protein SBO_4169 [Shigella boydii Sb227], gi\|81247888\|gb\|A... gi\|170520674, gi... - gi\|170682956\|ref\|YP_001745969.1\| AlpA family transcriptional regulator [Escherichia coli SMS-3-5], g... gi\|170019098, gi... - gi\|170019098\|ref\|YP_001724052.1\| phage transcriptional regulator, AlpA [Escherichia coli ATCC 8739],... gi\|168784922, gi... - gi\|189374800\|gb\|EDU93216.1\| transcriptional regulator, AlpA family [Escherichia coli O157:H7 str. EC... gi\|254038865, gi... - gi\|254038865\|ref\|ZP_04872917.1\| transcriptional regulator [Escherichia sp. 1_1_43], gi\|226838830\|gb\|...	88.0	[0..1]	[68..19]
gi\|75904 - gi\|75904\|pir\|\|Q1BPP4 hypothetical protein ORF1 - satellite phage P4	87.0	[0..1]	[68..19]
gi\|188494710, gi... - gi\|75513567\|ref\|ZP_00735958.1\| COG3311: Predicted transcriptional regulator [Escherichia coli 53638]...	87.0	[0..1]	[68..3]
gi\|75242552 - gi\|75242552\|ref\|ZP_00726296.1\| COG3311: Predicted transcriptional regulator [Escherichia coli F11] gi\|75234204 - gi\|75234204\|ref\|ZP_00718597.1\| COG3311: Predicted transcriptional regulator [Escherichia coli E11001...	87.0	[0..1]	[68..3]
gi\|29138653, gi\|... - gi\|29143020\|ref\|NP_806362.1\| hypothetical protein t2651 [Salmonella enterica subsp. enterica serovar...	87.0	[0..1]	[68..3]
gi\|37197440, gi\|... - gi\|37678699\|ref\|NP_933308.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37197440\|dbj\|BA...	86.0	[0..7]	[69..3]
Y9K_BPP4 - Uncharacterized protein ORF88 OS=Enterobacteria phage P4 PE=4 SV=1 gi\|76834 - gi\|76834\|pir\|\|JW0029 hypothetical 9.7K protein - satellite phage P4	86.0	[0..1]	[68..19]
gi\|229606211, gi... - gi\|229606211\|ref\|YP_002876859.1\| transcriptional regulator [Vibrio cholerae MJ-1236], gi\|229368866\|g... gi\|229519699, gi... - gi\|229519699\|ref\|ZP_04409142.1\| transcriptional regulator [Vibrio cholerae RC9], gi\|229344388\|gb\|EEO... gi\|229350448, gi... - gi\|229512555\|ref\|ZP_04402026.1\| hypothetical protein VCB_000197 [Vibrio cholerae TMA 21], gi\|2293504... gi\|11356284 - pir\|\|C82315 transcription regulator VC0497 [imported] - Vibrio cholerae (strain N16961 serogroup O1... gi\|254850731, gi... - gi\|254850731\|ref\|ZP_05240081.1\| transcriptional regulator [Vibrio cholerae MO10], gi\|254846436\|gb\|EE... gi\|153801469, gi... - gi\|153801469\|ref\|ZP_01956055.1\| transcriptional regulator [Vibrio cholerae MZO-3], gi\|124122960\|gb\|E... gi\|254223157, gi... - gi\|254223157\|ref\|ZP_04917015.1\| transcriptional regulator [Vibrio cholerae RC385], gi\|194535530\|ref\|... gi\|220897828 - gi\|220897828\|dbj\|BAH11090.1\| transcriptional regulator [Vibrio cholerae O1 biovar El tor] gi\|229353956, gi... - gi\|229509031\|ref\|ZP_04398519.1\| transcriptional regulator [Vibrio cholerae B33], gi\|229353956\|gb\|EEO... gi\|15640524, gi\|... - gi\|9654926\|gb\|AAF93670.1\| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961], ...	85.0	[0..7]	[69..1]
gi\|15801051, gi\|... - gi\|15801051\|ref\|NP_287067.1\| putative prophage regulatory protein [Escherichia coli O157:H7 EDL933],... gi\|13360762, gi\|... - gi\|15830556\|ref\|NP_309329.1\| putative regulatory protein [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|254792316, gi... - gi\|254792316\|ref\|YP_003077153.1\| putative prophage regulatory protein [Escherichia coli O157:H7 str.... gi\|13360762, gi\|... - gi\|15830556\|ref\|NP_309329.1\| putative regulatory protein [Escherichia coli O157:H7], gi\|13360762\|dbj... gi\|195935315 - gi\|195935315\|ref\|ZP_03080697.1\| putative regulatory protein [Escherichia coli O157:H7 str. EC4024] gi\|25495477, gi\|... - pir\|\|A85601 probable prophage regulatory protein [imported] - Escherichia coli (strain O157:H7, subs...	84.0	[0..4]	[63..9]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRSAVRIL RLPAVIQKTG MARATIYDWL NPKSPRYDAT FPKKRMLGVK SVGWIEAEID  60
   61 EWLSQRCKLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.30103
Match:	1z4hA
Description:	The response regulator TorI belongs to a new family of atypical excisionase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits