YRC Public Data Repository - Protein Structure Prediction

Protein:	ALLA_BRUME
Organism:	Brucella melitensis
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALLA_BRUME.

Description	E-value	Query Range	Subject Range
gi\|84362093 - gi\|84362093\|ref\|ZP_00986729.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia dolosa AUO158]	277.0	[0..3]	[169..1]
gi\|74019843, gi\|... - gi\|74019843\|ref\|ZP_00690455.1\| Ureidoglycolate hydrolase [Burkholderia ambifaria AMMD], gi\|72607488\|...	276.0	[0..3]	[169..1]
gi\|84354974 - gi\|84354974\|ref\|ZP_00979867.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia cenocepacia PC184] gi\|206560400, gi... - gi\|206560400\|ref\|YP_002231164.1\| ureidoglycolate hydrolase [Burkholderia cenocepacia J2315], gi\|1980...	275.0	[0..3]	[169..1]
ALLA_PSEA7 - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain PA7) GN=allA PE=3 SV=1	274.0	[0..3]	[168..1]
ALLA_BRUO2 - Ureidoglycolate lyase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=allA PE=3 SV=1 gi\|254701310 - gi\|254701310\|ref\|ZP_05163138.1\| ureidoglycolate hydrolase [Brucella suis bv. 5 str. 513] gi\|254703854 - gi\|254703854\|ref\|ZP_05165682.1\| ureidoglycolate hydrolase [Brucella suis bv. 3 str. 686] ALLA_BRUSU - Ureidoglycolate hydrolase OS=Brucella suis GN=allA PE=3 SV=1 ALLA_BRUSU - Ureidoglycolate lyase OS=Brucella suis biovar 1 (strain 1330) GN=allA PE=3 SV=1 gi\|254712935 - gi\|254712935\|ref\|ZP_05174746.1\| ureidoglycolate hydrolase [Brucella ceti M644/93/1] gi\|254716711 - gi\|254716711\|ref\|ZP_05178522.1\| ureidoglycolate hydrolase [Brucella ceti M13/05/1] ALLA_BRUSI - Ureidoglycolate lyase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=allA PE=3 SV=1 gi\|254707766 - gi\|254707766\|ref\|ZP_05169594.1\| ureidoglycolate hydrolase [Brucella pinnipedialis M163/99/10] ALLA_BRUC2 - Ureidoglycolate lyase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=allA PE=3 SV=1 gi\|254709649 - gi\|254709649\|ref\|ZP_05171460.1\| ureidoglycolate hydrolase [Brucella pinnipedialis B2/94]	274.0	[0..1]	[169..1]
gi\|77967489, gi\|... - gi\|78066744\|ref\|YP_369513.1\| ureidoglycolate hydrolase [Burkholderia sp. 383], gi\|77967489\|gb\|ABB088...	274.0	[0..3]	[169..1]
gi\|107100945 - gi\|107100945\|ref\|ZP_01364863.1\| hypothetical protein PaerPA_01001975 [Pseudomonas aeruginosa PACS2]	273.0	[0..3]	[168..1]
gi\|67658745, gi\|... - gi\|67658745\|ref\|ZP_00456114.1\| Ureidoglycolate hydrolase [Burkholderia cenocepacia AU 1054], gi\|6709... gi\|67666199, gi\|... - gi\|67666199\|ref\|ZP_00463451.1\| Ureidoglycolate hydrolase [Burkholderia cenocepacia HI2424], gi\|67100...	273.0	[0..3]	[169..1]
gi\|48788434, gi\|... - gi\|91783882\|ref\|YP_559088.1\| ureidoglycolate hydrolase [Burkholderia xenovorans LB400], gi\|91687836\|...	273.0	[0..3]	[169..1]
ALLA_PSEAB - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=allA PE=3 SV=1 ALLA_PSEA8 - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain LESB58) GN=allA PE=3 SV=1 ALLA_PSEAE - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228... gi\|254239863, gi... - gi\|84328428\|ref\|ZP_00976435.1\| COG3194: Ureidoglycolate hydrolase [Pseudomonas aeruginosa 2192], gi\|... gi\|126166541, gi... - gi\|84321700\|ref\|ZP_00970054.1\| COG3194: Ureidoglycolate hydrolase [Pseudomonas aeruginosa C3719], gi... ALLA_PSEAE - Ureidoglycolate hydrolase OS=Pseudomonas aeruginosa GN=allA PE=3 SV=1	272.0	[0..3]	[168..1]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIETLTVEP LTKEAFAPFG DVIEVEGAQL RLINNGTTER YHDLARVEAA GTQTRALINI  60
   61 FRGQSFAAPI DIMMMERHPF GSQAFIPLNG RPFLVVVAED AGAGPARPRA FLARGDQGVN 120
  121 YLRNIWHHPL LALEQKSDFL VVDRAGREDN LEEYFFSDYA YRIETTQTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	2bdrA
Description:	Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ureidoglycolate hydrolase activity	2.63080015873229	bayes_pls_golite062009
catalytic activity	0.401988496917198	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: