YRC Public Data Repository - Protein Structure Prediction

Protein:	AGAS_ECOLI
Organism:	Escherichia coli
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGAS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|78360243, gi\|... - gi\|78367697\|ref\|ZP_00837961.1\| Glucosamine-fructose-6-phosphate aminotransferase, isomerising [Shewa...	340.0	[0..2]	[379..238]
gi\|194332972, gi... - gi\|68551856\|ref\|ZP_00591250.1\| Glucosamine-fructose-6-phosphate aminotransferase, isomerising [Prost...	337.0	[0..6]	[379..248]
gi\|89953188, gi\|... - gi\|90023588\|ref\|YP_529415.1\| glutamine--fructose-6-phosphate transaminase [Saccharophagus degradans ...	336.0	[0..2]	[379..240]
gi\|77954433, gi\|... - gi\|77954433\|ref\|ZP_00818827.1\| Glucosamine-fructose-6-phosphate aminotransferase, isomerising [Marin...	336.0	[0..5]	[379..243]
gi\|83637713, gi\|... - gi\|83649670\|ref\|YP_438105.1\| D-fructose-6-phosphate amidotransferase [Hahella chejuensis KCTC 2396],...	335.0	[0..5]	[379..244]
gi\|110340072, gi... - gi\|110598264\|ref\|ZP_01386539.1\| glucosamine--fructose-6-phosphate aminotransferase, isomerizing [Chl...	335.0	[0..7]	[379..249]
GLMS_GEOSL - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Geobacter sulfurreducens (strain A... GLMS_GEOSL - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Geobacter sulfurreducens GN=glmS...	335.0	[0..3]	[379..236]
gi\|194335262, gi... - gi\|68549921\|ref\|ZP_00589378.1\| Glucosamine-fructose-6-phosphate aminotransferase, isomerising [Pelod...	334.0	[0..7]	[379..250]
gi\|67980522, gi\|... - gi\|95929996\|ref\|ZP_01312736.1\| glucosamine--fructose-6-phosphate aminotransferase, isomerizing [Desu...	333.0	[0..2]	[379..235]

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Predicted Domain #1

Region A:
Residues: [1-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPENYTPAAA ATGTWTEEEI RHQPRAWIRS LTNIDALRSA LNNFLEPLLR KENLRIILTG  60
   61 AGTSAFIGDI IAPWLASHTG KNFSAVPTTD LVTNPMDYLN PAHPLLLISF GRSGNSPESV 120
  121 AAVELANQFV PECYHLPITC NEAGALYQNA INSDNAFALL MPAETHDRGF AMTSSITTMM 180
  181 ASCLAVFAPE TINSQTFRDV ADRCQAILTS LGDFSEGVFG YAPWKRIVYL GSGGLQGAAR 240
  241 ESALKVLELT AGKLAAFYDS PTGFRHGPKS LVDDETLVVV FVSSHPYTRQ YDLDLLAELR 300
  301 RDNQAMRVIA IAAESSDIVA AGPHIILPPS RHFIDVEQAF CFLMYAQTFA LMQSLHMGNT 360
  361 PDTPSASGTV NRVVQGVIIH PWQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.154902
Match:	1moqA
Description:	ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH GLUCOSAMINE 6-PHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.997745058974352	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: