YRC Public Data Repository - Protein Structure Prediction

Protein:	AER_ECOLI
Organism:	Escherichia coli
Length:	506 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AER_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|52007875, gi\|... - gi\|74317636\|ref\|YP_315376.1\| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259], ...	336.0	[0..1]	[505..1]
gi\|91776285, gi\|... - gi\|91776285\|ref\|YP_546041.1\| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Met...	318.0	[0..1]	[505..1]
gi\|47574282 - gi\|47574282\|ref\|ZP_00244318.1\| COG0840: Methyl-accepting chemotaxis protein [Rubrivivax gelatinosus ... gi\|124260879, gi... - gi\|124268104\|ref\|YP_001022108.1\| aerotaxis sensor receptor [Methylibium petroleiphilum PM1], gi\|1242...	306.0	[0..1]	[505..1]
gi\|73539423, gi\|... - gi\|73539423\|ref\|YP_299790.1\| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Ral...	305.0	[0..1]	[505..4]
gi\|116651457, gi... - gi\|67665258\|ref\|ZP_00462523.1\| PAS [Burkholderia cenocepacia HI2424], gi\|67101126\|gb\|EAM18271.1\| PAS...	304.0	[0..1]	[505..1]
gi\|116694983, gi... - gi\|116694983\|ref\|YP_729194.1\| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protei...	304.0	[0..1]	[505..1]
gi\|67096754, gi\|... - gi\|67655475\|ref\|ZP_00452861.1\| PAS [Burkholderia cenocepacia AU 1054], gi\|67096754\|gb\|EAM14277.1\| PA...	304.0	[0..1]	[505..1]
gi\|194560767, gi... - gi\|84352979\|ref\|ZP_00977921.1\| COG0840: Methyl-accepting chemotaxis protein [Burkholderia cenocepaci...	304.0	[0..1]	[505..1]
gi\|76809336, gi\|... - gi\|76809336\|ref\|YP_332340.1\| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1710b], ...	303.0	[0..1]	[505..41]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHPYVTQQ NTPLADDTTL MSTTDLQSYI THANDTFVQV SGYTLQELQG QPHNMVRHPD  60
   61 MPKAAFADMW FTLKKGEPWS GIVKNRRKNG DHYWVRANAV PMVREGKISG YMSIRTRATD 120
  121 EEIAAVEPLY KALNAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.154902
Match:	2gj3A
Description:	No description for 2gj3A was found.

Predicted Domain #2

Region A:
Residues: [137-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTSKRIHKGL VVRKGWLGKL PSLPLRWRAR GVMTLMFILL AAMLWFVAAP VVTYILCALV  60
   61 VLLASACFEW QIVRPIENVA HQALKVATGE RNSVEHLNRS DELGLTLRAV GQLGLMCRWL 120
  121 INDVSSQVSS VRNGSETLAK GT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.81
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [279-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DELNEHTQQT VDNVQQTVAT MNQMAASVKQ NSATASAADK LSITASNAAV QGGEAMTTVI  60
   61 KTMDDIADST QRIGTITSLI NDIAFQTNIL ALNAAVEAAR AGEQGKGFAV VAGEVRHLAS 120
  121 RSANAANDIR KLIDASADKV QSGSQQVHAA GRTMEDIVAQ VKNVTQLIAQ ISHSTLEQAD 180
  181 GLSSLTRAVD ELNLITQKNA ELVEESAQVS AMVKHRASRL EDAVTVLH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1qu7A
Description:	Cytoplasmic domain of a serine chemotaxis receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits