YRC Public Data Repository - Protein Structure Prediction

Protein:	ADF1_PETHY
Organism:	Petunia x hybrida
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ADF1_PETHY.

Description	E-value	Query Range	Subject Range
gi\|48374972 - gi\|48374972\|gb\|AAT42170.1\| putative actin depolymerizing factor [Sorghum bicolor]	182.0	[0..1]	[138..325]
gi\|84028521 - gi\|84028521\|gb\|ABC49719.1\| actin depolymerizing factor-like protein [Arachis hypogaea]	171.0	[0..1]	[139..1]
ADF1_ARATH - Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1 gi\|195604826 - gi\|195604826\|gb\|ACG24243.1\| hypothetical protein [Zea mays]	171.0	[0..1]	[139..1]
gi\|68166241 - gi\|68166241\|gb\|AAY88048.1\| actin depolymerizing factor [Gossypium hirsutum]	169.0	[0..1]	[139..1]
gi\|106879609 - gi\|106879609\|emb\|CAJ38388.1\| actin-depolymerizing factor [Plantago major]	168.0	[0..1]	[139..1]
gi\|110681458 - gi\|110681458\|emb\|CAL25339.1\| actin-depolymerizing factor [Platanus x acerifolia]	168.0	[0..1]	[139..1]
gi\|92897576 - gi\|92897576\|gb\|ABE93742.1\| Actin-binding, cofilin/tropomyosin type [Medicago truncatula]	167.0	[0..1]	[139..1]
gi\|38564721 - gi\|38564721\|gb\|AAR23800.1\| putative actin-depolymerizing factor 2 [Helianthus annuus]	166.0	[0..1]	[139..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VVVEKIGEPT ESYEDFAASL  60
   61 PENECRYAVY DFDFVTAENC QKSRIFFIAW CPDTARVRSK MIYASSKDRF KRELDGIQVE 120
  121 LQACDPTEMG LDVIQSRAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.09691
Match:	1f7sA
Description:	Cofilin (actin depolymerizing factor, ADF)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits