YRC Public Data Repository - Protein Structure Prediction

Protein:	ABGB_ECOLI
Organism:	Escherichia coli
Length:	481 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABGB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|36787022, gi\|... - gi\|37527587\|ref\|NP_930931.1\| aminobenzoyl-glutamate utilization protein B [Photorhabdus luminescens ...	365.0	[0..2]	[481..3]
gi\|168762644, gi... - gi\|189367016\|gb\|EDU85432.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:H7 s... gi\|15831175, gi\|... - gi\|15831175\|ref\|NP_309948.1\| hypothetical protein ECs1921 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168756020, gi... - gi\|189356775\|gb\|EDU75194.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:H7 s... gi\|188016629, gi... - gi\|188016629\|gb\|EDU54751.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:H7 s... gi\|189371864, gi... - gi\|189371864\|gb\|EDU90280.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:H7 s... gi\|188999712, gi... - gi\|188999712\|gb\|EDU68698.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:H7 s... gi\|187769324, gi... - gi\|187769324\|gb\|EDU33168.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:H7 s... gi\|189361596, gi... - gi\|189361596\|gb\|EDU80015.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:H7 s... gi\|15831175, gi\|... - gi\|15831175\|ref\|NP_309948.1\| hypothetical protein ECs1921 [Escherichia coli O157:H7], gi\|13361386\|db... gi\|25501036, gi\|... - pir\|\|H85749 hypothetical protein Z2427 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15801828, gi\|... - gi\|15801828\|ref\|NP_287846.1\| hypothetical protein Z2427 [Escherichia coli O157:H7 EDL933], gi\|125154... gi\|208815679, gi... - gi\|208815679\|ref\|ZP_03256858.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:... gi\|208724607, gi... - gi\|208811101\|ref\|ZP_03252934.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:... gi\|195938006 - gi\|195938006\|ref\|ZP_03083388.1\| hypothetical protein EscherichcoliO157_16482 [Escherichia coli O157:... gi\|189377908, gi... - gi\|189377908\|gb\|EDU96324.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:H7 s... gi\|254792930, gi... - gi\|254792930\|ref\|YP_003077767.1\| predicted peptidase, aminobenzoyl-glutamate utilization protein [Es... gi\|217317659, gi... - gi\|217329220\|ref\|ZP_03445300.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:... gi\|209398564, gi... - gi\|209398564\|ref\|YP_002270397.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157... gi\|208739547, gi... - gi\|208819424\|ref\|ZP_03259744.1\| aminobenzoyl-glutamate utilization protein B [Escherichia coli O157:...	362.0	[0..1]	[481..1]
gi\|188490364, gi... - gi\|75515042\|ref\|ZP_00737246.1\| COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [Esche... gi\|169755225, gi... - gi\|170020297\|ref\|YP_001725251.1\| amidohydrolase [Escherichia coli ATCC 8739], gi\|169755225\|gb\|ACA779... gi\|124501073, gi... - gi\|124527909\|ref\|ZP_01699298.1\| amidohydrolase [Escherichia coli B], gi\|124501073\|gb\|EAY48540.1\| ami...	361.0	[0..1]	[481..1]
gi\|157155757, gi... - gi\|75190425\|ref\|ZP_00703692.1\| COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [Esche...	359.0	[0..1]	[481..1]
gi\|75231864, gi\|... - gi\|75231864\|ref\|ZP_00718205.1\| COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [Esche...	358.0	[0..1]	[481..1]
gi\|74312291, gi\|... - gi\|74312291\|ref\|YP_310710.1\| hypothetical protein SSON_1794 [Shigella sonnei Ss046], gi\|73855768\|gb\|...	356.0	[0..1]	[481..1]
gi\|193066949, gi... - gi\|75240015\|ref\|ZP_00723976.1\| COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [Esche...	355.0	[0..1]	[481..1]
gi\|75179006, gi\|... - gi\|75179006\|ref\|ZP_00699024.1\| COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [Shige...	355.0	[0..1]	[481..1]
gi\|75259450, gi\|... - gi\|75259450\|ref\|ZP_00730769.1\| COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [Esche... gi\|194426049, gi... - gi\|75212778\|ref\|ZP_00712776.1\| COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [Esche...	355.0	[0..1]	[481..1]
gi\|81245617, gi\|... - gi\|82544206\|ref\|YP_408153.1\| hypothetical protein SBO_1724 [Shigella boydii Sb227], gi\|81245617\|gb\|A...	351.0	[0..1]	[481..1]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEIYRFIDD AIEADRQRYT DIADQIWDHP ETRFEEFWSA EHLASALESA GFTVTRNVGN  60
   61 IPNAFIASFG QGKPVIALLG EYDALAGLSQ QAGCAQPTSV TPGENGHGCG HNLLGTAAFA 120
  121 AAIAVKKWLE QYGQGGTVRF YGCPGEEGGS GKTFMVREGV FDDVDAALTW HPEAFAGMFN 180
  181 TRTLANIQAS WRFKGIAAHA ANSPHLGRSA LDAVTLMTTG TNFLNEHIIE KARVHYAITN 240
  241 SGGISPNVVQ AQAEVLYLIR APEMTDVQHI YDRVAKIAEG AALMTETTVE CRFDKACSSY 300
  301 LPNRTLENAM YQALSHFGTP EWNSEELAFA KQIQATLTSN DRQNSLNNIA ATGGENGKVF 360
  361 ALRHRETVLA NEVAPYAATD NVLAAST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	1xmbA
Description:	X-RAY STRUCTURE OF IAA-AMINOACID HYDROLASE FROM ARABIDOPSIS THALIANA GENE AT5G56660
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.60465925169756	bayes_pls_golite062009
hydrolase activity	1.09326877662817	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [388-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVGDVSWKLP VAQCFSPCFA VGTPLHTWQL VSQGRTSIAH KGMLLAAKTM AATTVNLFLD  60
   61 SGLLQECQQE HQQVTDTQPY HCPIPKNVTP SPLK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	1xmbA
Description:	X-RAY STRUCTURE OF IAA-AMINOACID HYDROLASE FROM ARABIDOPSIS THALIANA GENE AT5G56660
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.904750394366227	bayes_pls_golite062009
hydrolase activity	0.47408202082411	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: