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View Structure Prediction Details

Protein: lin-44
Organism: Caenorhabditis elegans
Length: 169 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-44.

Description E-value Query
Range
Subject
Range
gi|48138880, gi|... - ref|XP_396946.1| similar to wingless [Apis mellifera], gi|110749798|ref|XP_396946.3| PREDICTED: simi...
213.0 [0..8] [159..253]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAAPFDFFF QSTALSTFFI LCSLAIKKTL ISSCKCHGVS GSCQQKTCWK RTATLEHITD  60
   61 YLVEKYARAK LYTDDSVVKT TDLIYLEASP DVCKAKSVAG RVCAWRNETH TQGDCDRLCC 120
  121 GNGFSIRHEV VRVKCDCEFV WCCNLVCKDC IQHRWISTCN GTPPKSLIF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 11.49485
Match: PF00110.10
Description: No description for PF00110.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle