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View Structure Prediction Details

Protein: klc-2
Organism: Caenorhabditis elegans
Length: 531 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for klc-2.

Description E-value Query
Range
Subject
Range
gi|113476999, gi... - gi|113476999|ref|YP_723060.1| peptidase-like [Trichodesmium erythraeum IMS101], gi|110168047|gb|ABG5...
364.0 [0..6] [531..219]

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Predicted Domain #1
Region A:
Residues: [1-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNMSQDDVT TGLRTVQQGL EALREEHSTI SNTLETSVKG VKEDEAPLPK QKLSQINDNL  60
   61 DKLVCGVDET SLMLMVFQLT QGMDAQHQKY QAQRRRLCQE NAWLRDELSS TQIKLQQSEQ 120
  121 MVAQLEEENK HLKYMASIKQ FDDGTQSDTK TSVDVGPQPV TNETLQELGF GPEDEEDMNA 180
  181 SQFNQPTPAN QMAASANVGY EIPARLRTLH NLVIQYASQG RYEVAVPLCK QALEDLEKTS 240
  241 GHDHPDVATM LNILALVYRD QNKYKEAANL LNEALSIREK CLGESHPAVA ATLNNLAVLF 300
  301 GKRGKFKDAE PLCKRALEIR EKVLGDDHPD VAKQLNNLAL LCQNQGKYEE VEKYYKRALE 360
  361 IYESKLGPDD PNVAKTKNNL SSAYLKQGKY KEAEELYKQI LTRAHEREFG QISGENKPIW 420
  421 QIAEEREENK HKGEGATANE QAGWAKAAKV DSPTVTTTLK NLGALYRRQG KYEAAETLED 480
  481 VALRAKKQII SLGNRSPTMG ESTQGQRKDK NNILMEWKRL PDCTNSSSSE Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.14253214573541 bayes_pls_golite062009
protein binding 1.65083457326273 bayes_pls_golite062009
signal sequence binding 0.49295886046194 bayes_pls_golite062009
peroxisome targeting sequence binding 0.0468412220974996 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle