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View Structure Prediction Details

Protein: ckk-1
Organism: Caenorhabditis elegans
Length: 541 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ckk-1.

Description E-value Query
Range
Subject
Range
gi|73760545 - gi|73760545|gb|AAZ82849.1| Cam kinase kinase protein 1, isoform b [Caenorhabditis elegans]
379.0 [0..30] [541..1]

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Predicted Domain #1
Region A:
Residues: [1-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTFARYSL TIPSIPENVI SHLRQWNEWM VGDTSDDSPG PSSTVSTMTT TGTVDRRSLL  60
   61 SAASMVRQQS DTTGVRRLVR ARAVQEDDEA GPHSSNNLAA TMSPNLSRPT RYVKSVSQQR 120
  121 SESYIQLNQY RLMEEIGQGS YGIVKLAYNE EDKNLYALKV LDKMKLLKNF ACFRQPPPRR 180
  181 NKENAAPSVL RNPLQLVQKE IAILKKLSHP NVVKLVEVLD DPNDNYLYMV FEFVEKGSIL 240
  241 EIPTDKPLDE DTAWSYFRDT LCGLEYLHYQ KIVHRDIKPS NLLLSDIGQV KIADFGVSCE 300
  301 FEGIDAFLSG TAGTPAFMAP EALTEGANHF YSGRAQDIWS LGITLYAFVI GTVPFVDNYI 360
  361 IALHKKIKND PIVFPEAPIL SEALQDIILG MLKKDPGHRL MLHEVKVHTW VTRDGTVPMS 420
  421 SEQENCHLVT VTEEEIENCV RVIPRLDTLI LVKAMGHRKR FGNPFRNKLS AQSSIRDRRK 480
  481 SSSVKDPTYV PPPNSPPATS NNNLNSTKVD RPEIKCIEMN LSGLTLKVDE AMQSKVESAR 540
  541 Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.522879
Match: 2f2uA
Description: No description for 2f2uA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle