YRC Public Data Repository - Protein Structure Prediction

Protein:	tag-342
Organism:	Caenorhabditis elegans
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-342.

Description	E-value	Query Range	Subject Range
gi\|39590835, gi\|... - gi\|39590835\|emb\|CAE65208.1\| Hypothetical protein CBG10083 [Caenorhabditis briggsae], gi\|187031529\|em... gi\|157774541 - gi\|157774541\|ref\|XP_001665336.1\| hypothetical protein CBG10083 [Caenorhabditis briggsae AF16]	615.0	[0..1]	[347..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKRAVKKK VQTTEKARPT LDQEIKLDDS NELEPSIRSV VTSLMFTSGD DENPLSENED  60
   61 FVVNILKNEL VLFINDVIEV YDNKIPNVKL QHMLQLLNSQ KGVLSRFIKY LKNRVEMSAF 120
  121 MRAKSFSKNG TEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ICGQEVENED ETTDEKIEEG VDPMDEIGEV GGEEGEYLKN KRRTYGTITS EENLLQEAQK  60
   61 SFFDAGLDFN TFENDVDENH NQQLIVLQTI LEDMNADEYS RFALARRVSF QNQSAVPVVY 120
  121 SDTFSKSNAR KRKRSPPTNN RQLLLQWLGN PPVHDESAQV FLAFLAKDII SEIVGNALLE 180
  181 RRKMNPAEGG PLSYSYYEEP LRRNRKFRKY GRILI