YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG27
Organism:	Saccharomyces cerevisiae
Length:	271 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG27.

Description	E-value	Query Range	Subject Range
ATG27_YEAST - Autophagy-related protein 27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG27 PE=1 ... ATG27 - Type I membrane protein involved in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; ...	1.0E-94	[1..271]	[1..271]
ATG27_CANAL - Autophagy-related protein 27 OS=Candida albicans GN=ATG27 PE=3 SV=1 ATG27_CANAL - Autophagy-related protein 27 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ATG27 PE=3 SV=1	2.0E-77	[7..271]	[3..252]
ATG27_ASHGO - Autophagy-related protein 27 OS=Ashbya gossypii GN=ATG27 PE=3 SV=1 ATG27_ASHGO - Autophagy-related protein 27 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y...	1.0E-75	[8..263]	[6..241]
gi\|40746535, gi\|... - gi\|67517165\|ref\|XP_658465.1\| hypothetical protein AN0861.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	3.0E-70	[9..271]	[13..296]
gi\|46109384, gi\|... - gi\|46109384\|ref\|XP_381750.1\| hypothetical protein FG01574.1 [Gibberella zeae PH-1], gi\|42545686\|gb\|E...	6.0E-62	[7..271]	[7..348]
gi\|49073508, gi\|... - gi\|71018537\|ref\|XP_759499.1\| hypothetical protein UM03352.1 [Ustilago maydis 521], ref\|XP_400967.1\| ...	2.0E-60	[7..252]	[24..299]
gi\|32404376, gi\|... - gi\|32404376\|ref\|XP_322801.1\| predicted protein [Neurospora crassa], gi\|28917900\|gb\|EAA27586.1\| predi... gi\|85081955 - gi\|85081955\|ref\|XP_956822.1\| hypothetical protein NCU03543 [Neurospora crassa OR74A]	2.0E-45	[12..194]	[26..228]
gi\|42569794, gi\|... - gi\|61742659\|gb\|AAX55150.1\| hypothetical protein At2g40316 [Arabidopsis thaliana], gi\|42569794\|ref\|NP...	1.0E-21	[194..271]	[134..212]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKTWICGF ISIITVVQAL SCEKHDVLKK YQVGKFSSLT STERDTPPST TIEKWWINVC  60
   61 EEHNVEPPEE CKKNDMLCGL TDVILPGKDA ITTQIIDFDK NIGFNVEE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESALTLTLK GATWGANSFD AKLEFQCNDN MKQDELTSHT WADKSIQLTL KGPSGCLKSK  60
   61 DDDKKNGDGD NGKDGDSEGK KPAKKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.820	f.15.1	Small-conductance potassium channel

Predicted Domain #3

Region A:
Residues: [195-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGTSWFTWLF LYALLFTLIY LMVVSFLNTR GGSFQDFRAE FIQRSTQFLT SLPEFCKEVV  60
   61 SRILGRSTAQ RGGYSAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits