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View Structure Prediction Details

Protein: YJL160C
Organism: Saccharomyces cerevisiae
Length: 287 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL160C.

Description E-value Query
Range
Subject
Range
PIR1_YEAST - Cell wall mannoprotein PIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIR1 PE=1 SV...
PIR1 - O-glycosylated protein required for cell wall stability; attached to the cell wall via beta-1,3-gluc...
329.0 [0..1] [287..1]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYKKAFLAS LLSSIALTAY APPEPWATLT PSSKMDGGTT EYRTSFGLAV IPFTVTESKV  60
   61 KRNVISQIND GQVQVTTQKL PHPVSQIGDG QIQVTTQKVP PVVSHIVSQI GDGQLQITTA 120
  121 K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.469 a.24.11 Bacterial GAP domain
View Download 0.425 d.93.1 SH2 domain
View Download 0.411 a.64.1 Saposin
View Download 0.389 a.24.17 Group V grass pollen allergen
View Download 0.368 d.131.1 DNA clamp

Predicted Domain #2
Region A:
Residues: [122-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVVTKSTIAV PSKTVTATAT STATAVSQIH DGQVQVTISS ASSSSVLSKS KLEPTKKPNN  60
   61 EKVIKVQACK SSGTLAITLQ GGVLIDSSGR IGSIVANRQF QFDGPPPQAG AIYAGGWSIT 120
  121 KHGTLAIGDN DVFYQCLSGT FYNLYDQSIG GQCNPVHLQT VGLVDC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.636 N/A N/A b.7.4 Rab geranylgeranyltransferase alpha-subunit, insert domain
View Download 0.460 N/A N/A b.55.1 PH domain-like
View Download 0.389 N/A N/A b.1.1 Immunoglobulin
View Download 0.368 N/A N/A b.60.1 Lipocalins
View Download 0.367 N/A N/A d.110.1 Profilin (actin-binding protein)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle