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View Structure Prediction Details

Protein: LDB7
Organism: Saccharomyces cerevisiae
Length: 180 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDB7.

Description E-value Query
Range
Subject
Range
gi|44985778, gi|... - gi|45201008|ref|NP_986578.1| AGL088Cp [Ashbya gossypii ATCC 10895], gi|44985778|gb|AAS54402.1| AGL08...
gi|44985778 - gi|44985778|gb|AAS54402.1| AGL088Cp [Ashbya gossypii ATCC 10895]
268.0 [0..8] [179..7]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSNMGYYD VLAGLSALEK SSQVVFSATE LQQLTQQSHA TDKGIEGSEN SKAKVSKPKR  60
   61 VAVHGYLGGK VSLADAAQVE YEVGHSLLGS YVPRQQLEAL SSVDFSHHFH RTLECKAALE 120
  121 THDVFLAGAG QLSLPFQSHI ESPRNSEAKR KRKVIICKRC QSRFIGSHRR SQLREHACVD 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.920819
Match: PF08586.1
Description: No description for PF08586.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle