YRC Public Data Repository - Protein Structure Prediction

Protein:	TAD3
Organism:	Saccharomyces cerevisiae
Length:	163 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAD3.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-38	[1..157]	[15..156]
TADA_SHIFL - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Shigella flexneri gi\|218352918, gi... - gi\|218696186\|ref\|YP_002403853.1\| tRNA-specific adenosine deaminase [Escherichia coli 55989], gi\|2183... gi\|24113886, gi\|... - gi\|24113886\|ref\|NP_708396.1\| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 301], gi\|2... gi\|218361852, gi... - gi\|218555084\|ref\|YP_002387997.1\| tRNA-specific adenosine deaminase [Escherichia coli IAI1], gi\|21836... gi\|254289295, gi... - gi\|254289295\|ref\|YP_003055043.1\| tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)], gi\|... gi\|218547914, gi... - gi\|218547914\|ref\|YP_002381705.1\| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC 3546... YFHC_ECOLI, TADA... - (P30134) Hypothetical protein yfhC, tRNA-specific adenosine deaminase (EC 3.5.4.-) - Escherichia col... gi\|209920038, gi... - gi\|209920038\|ref\|YP_002294122.1\| tRNA-specific adenosine deaminase [Escherichia coli SE11], gi\|20991... gi\|30042202, gi\|... - gi\|30063946\|ref\|NP_838117.1\| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T], gi... gi\|82545011, gi\|... - gi\|82545011\|ref\|YP_408958.1\| tRNA-specific adenosine deaminase [Shigella boydii Sb227], gi\|81246422\|... gi\|1788911, gi\|1... - gi\|1788911\|gb\|AAC75612.1\| tRNA-specific adenosine deaminase [Escherichia coli K12], gi\|16130484\|ref\|... gi\|85675450, gi\|... - gi\|89109365\|ref\|AP_003145.1\| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. W... gi\|157067716, gi... - gi\|157162036\|ref\|YP_001459354.1\| tRNA-specific adenosine deaminase [Escherichia coli HS], gi\|1570677... gi\|1033148\|gb\|AA... - alternate name yfhC; orf178 of GenBank Accession Number X72336 gi\|188491218, gi... - gi\|188496019\|ref\|ZP_03003289.1\| tRNA-specific adenosine deaminase [Escherichia coli 53638], gi\|18849... gi\|187427445, gi... - gi\|187730453\|ref\|YP_001881338.1\| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94], gi... gi\|253974435, gi... - gi\|254162534\|ref\|YP_003045642.1\| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606],... gi\|251785887, gi... - gi\|251785887\|ref\|YP_003000191.1\| hypothetical protein B21_02417 [Escherichia coli BL21], gi\|24237816...	9.0E-38	[1..157]	[15..156]
TADA_HAEIN, YFHC... - (P44931) Hypothetical protein HI0906, tRNA-specific adenosine deaminase OS=Haemophilus influenzae GN... TADA_HAEIN - tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ...	1.0E-37	[2..157]	[8..149]
gi\|16761480 - gi\|16761480\|ref\|NP_457097.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... TADA_SALTI - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Salmonella typhi gi\|16421115, gi\|... - gi\|16765888\|ref\|NP_461503.1\| tRNA-specific adenosine deaminase [Salmonella typhimurium LT2], gi\|1642... TADA_SALTY - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Salmonella typhimurium gi\|29136448, gi\|... - gi\|29140823\|ref\|NP_804165.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... gi\|62181133, gi\|... - gi\|62181133\|ref\|YP_217550.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=yfhC] [protein=tRNA-specific adenosine deaminase] [protein_id=YP_005238675.1] [location=comple... gi\|16503780, gi\|... - gi\|25303877\|pir\|\|AF0827 conserved hypothetical protein STY2814 [imported] - Salmonella enterica subs... gi\|224582890, gi... - gi\|224582890\|ref\|YP_002636688.1\| hypothetical protein SPC_1081 [Salmonella enterica subsp. enterica ...	1.0E-37	[1..157]	[15..156]
gi\|115513905, gi... - gi\|117624781\|ref\|YP_853694.1\| tRNA-specific adenosine deaminase [Escherichia coli APEC O1], gi\|11551... gi\|218690674, gi... - gi\|218690674\|ref\|YP_002398886.1\| tRNA-specific adenosine deaminase [Escherichia coli ED1a], gi\|21842... gi\|218366248, gi... - gi\|218559479\|ref\|YP_002392392.1\| tRNA-specific adenosine deaminase [Escherichia coli S88], gi\|218366... TADA_ECO57 - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Escherichia coli O157:H7 gi\|25303867, gi\|... - pir\|\|E85901 probable deaminase yfhC [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|189009982, gi... - gi\|189009982\|ref\|ZP_02803540.2\| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4... gi\|12516972, gi\|... - gi\|15803084\|ref\|NP_289115.1\| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 EDL933], gi... gi\|91073458, gi\|... - gi\|91211884\|ref\|YP_541870.1\| tRNA-specific adenosine deaminase [Escherichia coli UTI89], gi\|91073458... gi\|187770595, gi... - gi\|187775816\|ref\|ZP_02798525.2\| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4... gi\|13362896, gi\|... - gi\|15832679\|ref\|NP_311452.1\| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. Sakai]... gi\|82777934, gi\|... - gi\|82777934\|ref\|YP_404283.1\| tRNA-specific adenosine deaminase [Shigella dysenteriae Sd197], gi\|8124... gi\|110642721, gi... - gi\|110642721\|ref\|YP_670451.1\| tRNA-specific adenosine deaminase [Escherichia coli 536], gi\|110344313... gi\|194432153, gi... - gi\|194432153\|ref\|ZP_03064442.1\| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012], gi\|19... gi\|237705067, gi... - gi\|237705067\|ref\|ZP_04535548.1\| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA], gi\|22... gi\|190907120, gi... - gi\|191172647\|ref\|ZP_03034186.1\| tRNA-specific adenosine deaminase [Escherichia coli F11], gi\|1909071... gi\|189378592, gi... - gi\|189405736\|ref\|ZP_02823945.2\| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC5... gi\|189405037, gi... - gi\|189405037\|ref\|ZP_02812923.2\| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC8...	2.0E-37	[1..157]	[15..156]
gi\|15601943, gi\|... - gi\|15601943\|ref\|NP_245015.1\| hypothetical protein PM0078 [Pasteurella multocida subsp. multocida str...	1.0E-36	[2..155]	[3..142]
gi\|16804756 - gi\|16804756\|ref\|NP_466241.1\| hypothetical protein lmo2719 [Listeria monocytogenes EGD-e] gi\|224502871 - gi\|224502871\|ref\|ZP_03671178.1\| hypothetical protein LmonFR_10179 [Listeria monocytogenes FSL R2-561... gi\|25303874, gi\|... - pir\|\|AF1414 conserved hypothetical proteins lmo2719 [imported] - Listeria monocytogenes (strain EGD-... gi\|255029049 - gi\|255029049\|ref\|ZP_05301000.1\| hypothetical protein LmonL_07681 [Listeria monocytogenes LO28]	7.0E-36	[7..161]	[5..144]
gi\|15612596, gi\|... - gi\|15612596\|ref\|NP_240899.1\| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125], gi\|10172... gi\|25303865 - pir\|\|A83654 Cu binding protein (Mn oxidation) BH0033 [imported] - Bacillus halodurans (strain C-125)	2.0E-35	[1..158]	[1..143]
gi\|16415402, gi\|... - pir\|\|AE1790 conserved hypothetical protein lin2867 [imported] - Listeria innocua (strain Clip11262),... gi\|16801927 - gi\|16801927\|ref\|NP_472195.1\| hypothetical protein lin2867 [Listeria innocua Clip11262]	2.0E-35	[7..161]	[5..144]
gi\|253315668 - gi\|253315668\|ref\|ZP_04838881.1\| putative deaminase [Staphylococcus aureus subsp. aureus str. CF-Mars... gi\|251813508, gi... - gi\|251813508\|ref\|ZP_04827981.1\| deaminase [Staphylococcus aureus subsp. aureus TCH70], gi\|251803010\|... gi\|21203678, gi\|... - gi\|21282242\|ref\|NP_645330.1\| hypothetical protein MW0513 [Staphylococcus aureus subsp. aureus MW2], ... gi\|88194321, gi\|... - gi\|88194321\|ref\|YP_499113.1\| hypothetical protein SAOUHSC_00541 [Staphylococcus aureus subsp. aureus... gi\|49485423, gi\|... - gi\|49485423\|ref\|YP_042644.1\| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476], gi\|49... gi\|87126661, gi\|... - gi\|87160687\|ref\|YP_493246.1\| putative deaminase [Staphylococcus aureus subsp. aureus USA300_FPR3757]... gi\|87160687\|ref\|... - putative deaminase [Staphylococcus aureus subsp. aureus USA300], putative deaminase [Staphylococcus ... gi\|25303869 - pir\|\|H89823 hypothetical protein SA0516 [imported] - Staphylococcus aureus (strain N315) gi\|269202181\|ref... - putative tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus ED98] gi\|151220732, gi... - gi\|151220732\|ref\|YP_001331554.1\| hypothetical protein NWMN_0520 [Staphylococcus aureus subsp. aureus... gi\|149945517, gi... - gi\|90582716\|ref\|ZP_01238479.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Staphylococc... gi\|156721022, gi... - gi\|156978887\|ref\|YP_001441146.1\| hypothetical protein SAHV_0556 [Staphylococcus aureus subsp. aureus... TADA_STAAM - tRNA-specific adenosine deaminase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=tadA PE=1 ... gi\|147740087, gi... - gi\|90585428\|ref\|ZP_01241138.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Staphylococc... gi\|13700450, gi\|... - gi\|15926236\|ref\|NP_373769.1\| hypothetical protein SA0516 [Staphylococcus aureus subsp. aureus N315],... gi\|161508798, gi... - gi\|161508798\|ref\|YP_001574457.1\| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516], gi\|... gi\|221139630 - gi\|221139630\|ref\|ZP_03564429.1\| deaminase [Staphylococcus aureus subsp. aureus str. JKD6008] gi\|221141004 - gi\|221141004\|ref\|ZP_03565497.1\| deaminase [Staphylococcus aureus subsp. aureus str. JKD6009] gi\|255005352 - gi\|255005352\|ref\|ZP_05143953.2\| putative deaminase [Staphylococcus aureus subsp. aureus Mu50-omega] gi\|253729496, gi... - gi\|253732567\|ref\|ZP_04866732.1\| deaminase [Staphylococcus aureus subsp. aureus TCH130], gi\|253729496...	3.0E-35	[5..158]	[4..142]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEVRNELSR ASTLSVKMAT AGKQFPMVSV FVDPSRKKDK VVAEDGRNCE NSLPIDHSVM  60
   61 VGIRAVGERL REGVDEDANS YLCLDYDVYL THEPCSMCSM ALIHSRVRRV VFLTEMQRTG 120
  121 SLKLTSGDGY CMNDNKQLNS TYEAFQWIGE EYPVGQVDRD VCC

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.56
Match:	1jtkA
Description:	mono-domain cytidine deaminase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits