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View Structure Prediction Details

Protein: gi|17064894, gi|...
Organism: Arabidopsis thaliana
Length: 642 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17064894, gi|....

Description E-value Query
Range
Subject
Range
MTNA_GEODF - Methylthioribose-1-phosphate isomerase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32)...
354.0 [0..289] [635..1]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV  60
   61 MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPDGSTTASP GRHSRGSFVK SSVPVASSLP GIGMDSMAAA KSSSVPASGL TTVSVVTMPP  60
   61 GLSEKASGME VQSDQKKPLK EKTTKAERRA IQEAQRAAKA AAKADGGKVA PVSSASVAST 120
  121 SVKAAKPAKA TSQKNDVAVA TGAAEKKGGP SEKDRKKDAP HPRMQYDDES RVVKAKRRAV 180
  181 VKQTEAKN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #3
Region A:
Residues: [288-642]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVELFRHLPQ YEHGTQLPDL ETKFFQLDPM HPAVYKVGLQ YLSGDISGGN ARCIAMLQAF  60
   61 QEVVKDYSTP PEKSLNRDMT AKISSYVSFL IECRPLSISM GNAIRFVKNR IAKLPITLSE 120
  121 SEAKATLQSD IERFINEKII VADTVIVKHA VTKIRDGDVL LTYGSPTAVE MVILHAHELR 180
  181 KKFRVLVVDS RPKLEGQLLL RRLIKRGINC TYTHINAISY IMHEVTKVFL GASSVLSNGT 240
  241 VYSRVGTACV AMVANAFRVP VLVCCEAYKF HERVQLDSIC SNELGDPNAI SEVHGREDIN 300
  301 YLDGLTNNAN LQFLNLMYDA TPSDYISMII TDYGMVPPTS VPVIVREYQK EHLLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.69897
Match: 1t9kA
Description: X-ray crystal structure of aIF-2B alpha subunit-related translation initiation factor [Thermotoga maritima]
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.787268490517916 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle