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View Structure Prediction Details

Protein: ABI4_ARATH
Organism: Arabidopsis thaliana
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABI4_ARATH.

Description E-value Query
Range
Subject
Range
gi|24940524 - gi|24940524|emb|CAD56466.1| ethylene response element binding protein [Triticum aestivum]
251.0 [0..2] [328..56]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ  60
   61 RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY LYGSRAQLNL TPSSPSSVSS 120
  121 SSSSVSAASS PSTS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.09691
Match: 1gccA
Description: GCC-box binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.339357445627225 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [135-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSTQTLRPL LPRPAAATVG GGANFGPYGI PFNNNIFLNG GTSMLCPSYG FFPQQQQQQN  60
   61 QMVQMGQFQH QQYQNLHSNT NNNKISDIEL TDVPVTNSTS FHHEVALGQE QGGSGCNNNS 120
  121 SMEDLNSLAG SVGSSLSITH PPPLVDPVCS MGLDPGYMVG DGSSTIWPFG GEEEYSHNWG 180
  181 SIWDFIDPIL GEFY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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