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View Structure Prediction Details

Protein: RER4_ARATH
Organism: Arabidopsis thaliana
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RER4_ARATH.

Description E-value Query
Range
Subject
Range
gi|51971208 - gi|51971208|dbj|BAD44296.1| unknown protein [Arabidopsis thaliana]
535.0 [0..1] [386..1]
gi|54287600, gi|... - gi|54287600|gb|AAV31344.1| unknown protein [Oryza sativa Japonica Group], gi|222631454|gb|EEE63586.1...
416.0 [0..101] [383..96]
gi|116310947, gi... - gi|125549075|gb|EAY94897.1| hypothetical protein OsI_16697 [Oryza sativa Indica Group], gi|116310947...
389.0 [0..103] [383..119]
gi|92877971 - gi|92877971|gb|ABE84885.1| Trimeric LpxA-like [Medicago truncatula]
388.0 [0..101] [383..427]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL  60
   61 SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNRNEAMLLL KESGIELESL PKDLAAAIEA GRIPGSVITR FLELQKSAVM RWLMQFGGFR  60
   61 ERLLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [165-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDLFMAKLAM ECGVGIFTKT AAEYERRREN FFNELEVVFA DVAMAIIADF MLVYLPAPTV  60
   61 SLRPPLALTA GGISKFFHNC PDNAFQVALS GTSYTLLQRL GAITRNGAKL FAVGTTSSLV 120
  121 GTAITNAFIK ARKAVDQNSE GEVETVPIVS TSVAYGVYMA VSSNLRYQIV AGVIEQRLLE 180
  181 PMLHQHKLAL SALCFAVRTG NTFLGSLLWV DYARLIGIQK SH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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