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View Structure Prediction Details

Protein: PAPS2_ARATH
Organism: Arabidopsis thaliana
Length: 800 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAPS2_ARATH.

Description E-value Query
Range
Subject
Range
gi|30682917 - gi|30682917|ref|NP_850071.1| nucleotidyltransferase family protein [Arabidopsis thaliana]
886.0 [0..1] [781..1]

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Predicted Domain #1
Region A:
Residues: [1-508]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE  60
   61 TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI FTFGSYRLGV HGPMADIDTL 120
  121 CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL 180
  181 VIPQDLDISN SSVLCDVDEQ TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV 240
  241 YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS 300
  301 FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ 360
  361 HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES RFRQLTLKIE RDTNGMLMCH 420
  421 PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD 480
  481 VHVSHVRRRQ LPSFVFPNGY KRSRQSRH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1f5aA
Description: Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.122769147009 bayes_pls_golite062009
RNA binding 1.07207584601969 bayes_pls_golite062009
nucleotidyltransferase activity 0.92178707322923 bayes_pls_golite062009
polynucleotide adenylyltransferase activity 0.911825870004661 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.667889614569279 bayes_pls_golite062009
transferase activity 0.63270331673446 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [509-800]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSQQCREPGD EGVGSLSDSV ERYAKRKNDD EIMNSRPEKR EKRASCSLHT LDAASPDSSG  60
   61 ITTSGTPQIG IVPGPRAECL VTGDLVCNVT SLPNVEVEAE KFISKITELR KFSQYEHTSG 120
  121 SEQILEVDSR ALVQSYHDLA EPVAKHVRPD LSALLACEGG QNKEIGHDMG SESINDTDTQ 180
  181 HLPRRLNVNE DVDEVEREAK LGEIAGGVLW NGHCGRNLDH EGFVTPANLD SAVENRNLHS 240
  241 DGLFKSGLPE ELQSNSLLSG TGKLDDGARS ESLQNEMMRH VFLQPIIGLC KS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle