YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DSP8_ARATH
Organism: Arabidopsis thaliana
Length: 337 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSP8_ARATH.

Description E-value Query
Range
Subject
Range
gi|76622246 - gi|76622246|ref|XP_617648.2| PREDICTED: similar to protein tyrosine phosphatase, receptor type, sigm...
219.0 [0..26] [313..1242]

Back

Predicted Domain #1
Region A:
Residues: [1-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIKELTETD EEKRERSVED NVDDGDKAVL VSRGNVIVLT TKRALVGVGA RALFYPTLVY  60
   61 NVVRNKLESE FRWWDRVAEF ILLGAVPFPS DVPQLKELGV CGVITLNEPY ETLVPSSLYK 120
  121 SYCIDHLVIA TRDYCFAPSM EAICQAVEFI HRNASLGKTT YVHCKAGRGR STTIVICYLV 180
  181 QHKNMTPEAA YSYVRSIRPR VLLAAAQWKA VVEYYHVKVL NTQSCLTDAT SALIPRNVKQ 240
  241 VCSGNVVVFD DGSMVVVTHS DLEGYNDDDS RSRRSVKVNG NELWAAAADL SMVYRVKVVG 300
  301 QAAMARISCL WLGLREDQKL SGKNLSMGGI SVDISVY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.0
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle