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View Structure Prediction Details

Protein: IF62_ARATH
Organism: Arabidopsis thaliana
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF62_ARATH.

Description E-value Query
Range
Subject
Range
IF6_XENLA - Eukaryotic translation initiation factor 6 OS=Xenopus laevis GN=eif6 PE=2 SV=1
409.0 [0..1] [244..1]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRLQFENN CEVGVFSKLT NAYCLVAIGG SENFYSAFES ELADVIPIVK TSIGGTRIIG  60
   61 RLCAGNKNGL LVPHTTTDQE LQHLRNSLPD QVVVQRIDER LSALGNCIAC NDYVALAHTD 120
  121 LDKETEEIIA DVLGVEVFRQ TIAGNILVGS YCALSNKGGM VHPHTSVEDL EELSTLLQVP 180
  181 LVAGTVNRGS EVIAAGMTVN DWTSFCGSDT TATELSVIDS IFKLREAQPS SIVDEMRKSL 240
  241 IDTYV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1g62A
Description: Ribosome anti-association factor eIF6 (aIF6)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation initiation factor activity 2.82313826209658 bayes_pls_golite062009
ribosomal large subunit binding 2.29551693750603 bayes_pls_golite062009
binding 1.48640777619976 bayes_pls_golite062009
nucleic acid binding 1.14138534491569 bayes_pls_golite062009
hydrolase activity 1.05437300113124 bayes_pls_golite062009
catalytic activity 0.889920589881492 bayes_pls_golite062009
protein binding 0.21271994410782 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle