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View Structure Prediction Details

Protein: P2C40_ARATH
Organism: Arabidopsis thaliana
Length: 493 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P2C40_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592523 - gi|21592523|gb|AAM64473.1| unknown [Arabidopsis thaliana]
342.0 [0..1] [493..1]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEGTDPYGE IEISFGYQCN NKKIGIPEDK IADGREVLGG FRLQKTSSFS CLSGAALSGN  60
   61 PTLANTNICN GVIGSEILPS LDSPKSFRKV PSSPALSKLD ILSPSLHGSM VSLSCSSSTS 120
  121 PSPPEPE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-493]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCYLTSMSSP SSVNEGFLLS AMEVQVAGGA AGEDRVQAVC SEENGWLFCA IYDGFNGRDA  60
   61 ADFLACTLYE SIVFHLQLLD RQMKQTKSDD DGEKLELLSN ISNVDYSSTD LFRQGVLDCL 120
  121 NRALFQAETD FLRMVEQEME ERPDLVSVGS CVLVTLLVGK DLYVLNLGDS RAVLATYNGN 180
  181 KKLQAVQLTE DHTVDNEVEE ARLLSEHLDD PKIVIGGKIK GKLKVTRALG VGYLKKEKLN 240
  241 DALMGILRVR NLLSPPYVSV EPSMRVHKIT ESDHFVIVAS DGLFDFFSNE EAIGLVHSFV 300
  301 SSNPSGDPAK FLLERLVAKA AARAGFTLEE LTNVPAGRRR RYHDDVTIMV ITLGTDQRTS 360
  361 KASTFV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.30103
Match: 2p8eA
Description: No description for 2p8eA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle