YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RPB8B_ARATH
Organism: Arabidopsis thaliana
Length: 146 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPB8B_ARATH.

Description E-value Query
Range
Subject
Range
RPB8A_ARATH - DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana GN=NRPB8A PE=1 SV=1
231.0 [0..1] [146..1]

Back

Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNIIMFED IFVVDKLDPD GKKFDKVTRV EARSHNLEMF MHLDVNTEVY PLAVGDKFTL  60
   61 AMAPTLNLDG TPDTGYFTPG AKKTLADKYE YIMHGKLYKI SERDGKTPKA ELYVSFGGLL 120
  121 MLLQGDPAHI SHFELDQRLF LLMRKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.69897
Match: 2f3iA
Description: No description for 2f3iA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle