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View Structure Prediction Details

Protein: PFPA1_ARATH
Organism: Arabidopsis thaliana
Length: 614 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFPA1_ARATH.

Description E-value Query
Range
Subject
Range
PFPA_RICCO - Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-AL...
623.0 [0..1] [610..1]

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Predicted Domain #1
Region A:
Residues: [1-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDFGIPRE LSPLQQLRSQ YKPELPPCLQ GTTVRVELGD GTTVAEAADS HTMARAFPHT  60
   61 LGQPLAHFLR ETAQVPDAHI ITELPSVRVG IVFCGRQAPG GHNVIWGLFE ALKVHNAKST 120
  121 LLGFLGGSEG LFAQKTLEIT DDILQTYKNQ GGYDLLGRTK DQIKTTEQVN AALKACTDLK 180
  181 LDGLVIIGGV ISNTDAAHLA EFFAAAKCST KVVGVPVTTN GDLKNQFVEA NVGFDTICKV 240
  241 NSQLISNACT DALSAEKYYY FIRLMGRKHS HVALECTLQS HPNMVILGEE VAASKLTIFD 300
  301 IAKQICDAVQ ARAVEDKNHG VILIPEGLIV SIPEVYALLK EIHGLLRQGV SADKISTQLS 360
  361 PWSSALFEFL PPFIKKQLLL HPESDDSAQL SQIETEKLLA YLVETEMNKR LKEGTYKGKK 420
  421 FNAICHFFGY QARGSLPSKF DCDYAYVLGH ICYHILAAGL NGYMATVTNL KSPVNKWKCG 480
  481 ATPITAMMTV KHWSQDASYT LTSIGRPAIH PAMVDLKGKA YDLLRQNAQK FLMEDLYRNP 540
  541 GPLQYDGPGA D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 139.0
Match: 1kzhA
Description: Pyrophosphate-dependent phosphofructokinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.36206206719674 bayes_pls_golite062009
transferase activity 0.84629334577842 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.7560441622854 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.72507583349345 bayes_pls_golite062009
kinase activity 0.58654139962588 bayes_pls_golite062009
carbohydrate kinase activity 0.52459627481184 bayes_pls_golite062009
phosphofructokinase activity 0.52213265030802 bayes_pls_golite062009
6-phosphofructokinase activity 0.379731437688011 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [552-614]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKAVSLCVED QDYMGRIKKL QEYLDQVRTI VKPGCSQDVL KAALSVMASV TDVLTTISSN  60
   61 GGQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle