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View Structure Prediction Details

Protein: gi|7406397, gi|9...
Organism: Arabidopsis thaliana
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7406397, gi|9....

Description E-value Query
Range
Subject
Range
gi|18491271, gi|... - gi|62320376|dbj|BAD94777.1| hypothetical protein [Arabidopsis thaliana], gi|3894191|gb|AAC78540.1| u...
233.0 [0..15] [383..50]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCVSSKLGK KKLIREIRVN NGGDHIVSLT STTYGHLDLD ERAETSPKSL EVTKGEVFES  60
   61 EIIPRRSIKR DDPEIINTWE LMEDLEDSMH VSNPQKISPK SRGIFGKSWK TPVKSVVESP 120
  121 KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY 180
  181 SPMFDPDLVA SYERELSQEK EQIKMVISPV VHESRKTE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [219-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTERILEKFP EKCPPGGEHS VVIYITTLRG IRKTFEDCNV VRSILDSHEV RFSERDVSMH  60
   61 SVFKEEIRGI MGTKHVKIPA VFVKGRMVGS VEEVMRLEEE GKLGILLEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.154902
Match: 1ykaA
Description: Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [328-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPAARLGGSC CRGCGGMRFM MCVVCNGSCK VREEEKKSMV KCLKCNENGL VLCPICS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.81
Match: 2cttA
Description: Solution structure of zinc finger domain from human DnaJ subfamily A menber 3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle