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View Structure Prediction Details

Protein: RH43_ARATH
Organism: Arabidopsis thaliana
Length: 542 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH43_ARATH.

Description E-value Query
Range
Subject
Range
RH35_ARATH - DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1
415.0 [0..28] [542..77]

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Predicted Domain #1
Region A:
Residues: [1-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDDGYVEY VPVEERLAQM KRKVVEEPGK GMMEHLSDKK KLMSVGELAR GITYTEPLST  60
   61 WWKPPLHVRK MSTKQMDLIR KQWHITVNGE DIPPPIKNFM DMKFPSPLLR MLKDKGIMHP 120
  121 TPIQVQGLPV VLSGRDMIGI AFTGSGKTLV FVLPMIILAL QEEIMMPIAA GEGPIALVIC 180
  181 PSRELAKQTY DVVEQFVASL VEDGYPRLRS LLCIGGVDMR SQLDVVKKGV HIVVATPGRL 240
  241 KDILAKKKMS LDACRLLTLD EADRLVDLGF EDDIRHVFDH FKSQRQTLLF SATMPAKIQI 300
  301 FATSALVKPV TVNVGRAGAA NLDVIQEVEY VKQEAKIVYL LECLQKTTPP VLIFCENKAD 360
  361 VDDIHEYLLL KGVEAVAIHG GKDQEDRDYA ISLFKAGKKD VLVATDVASK GLDFPDIQHV 420
  421 INYDMPGEIE NYVHRIGRTG RCGKTGIATT FINKNQSEIT LLDLKHLLQE AKQRI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 99.0
Match: 2db3A
Description: No description for 2db3A was found.

Predicted Domain #2
Region A:
Residues: [476-542]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPVLAELNGP MEETETIANA SGVKGCAYCG GLGHRILQCP KFEHQKSVAI SSSRKDHFGS  60
   61 DGYRGEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 2v8oA
Description: No description for 2v8oA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle