| Protein: | gi|7270183, gi|2... |
| Organism: | Arabidopsis thaliana |
| Length: | 765 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7270183, gi|2....
| Description | E-value | Query Range |
Subject Range |
|
|
269.0 | [0..170] | [761..119] |
|
|
268.0 | [0..170] | [761..119] |
|
|
247.0 | [0..162] | [757..111] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 METEDFASDL QSPSASSDHR FEVNRILGCG EIEDTEAIDE ALVLNSSLLE TPFQVLYDDT 60
61 ELVDNGNCGD EESLNQECYG LDQVVVDDSD DEDG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.689 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.524 | a.46.1 | Methionine synthase domain |
| View | Download | 0.523 | a.46.1 | Methionine synthase domain |
| View | Download | 0.519 | a.118.1 | ARM repeat |
| View | Download | 0.481 | a.4.1 | Homeodomain-like |
| View | Download | 0.456 | a.46.1 | Methionine synthase domain |
| View | Download | 0.456 | a.77.1 | DEATH domain |
| View | Download | 0.405 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.404 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.270 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.225 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.225 | a.4.1 | Homeodomain-like |
| View | Download | 0.205 | a.200.1 | Description not found. |
|
Region A: Residues: [95-250] |
1 11 21 31 41 51
| | | | | |
1 SVAAGEPMCL PELSPKAGDI LLESDGSNDH ECQTGKQESN CDTVTGFQGS LRITASSHGP 60
61 GLDFLDSQEP GESTQADALG FVDHFLMDKD LNLSPVDLPV NSCRRKSSPV SGAKGCQSLA 120
121 KRIMSRSPTR KMSVFDWSSD QCDVSDPKTS PVTRAS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [251-453] |
1 11 21 31 41 51
| | | | | |
1 ITCSKIREDQ VAGDDFGVKK RSRDPCDIRK VSSHPTQRVM KNSSAKHLKM EQASGLSEGI 60
61 MFISQKDAQL EDKAPKEPLE PEEDFIDIGI NTQIAAEAMS ALVYAPCTTE EACESDPIPG 120
121 SVSEMRDQVS NLSRRNNDTI EGEPERDKLN GLFSAAPHRE RNSKKKRKFT NEERTRANVS 180
181 VKTCLLNLCE WRHPRAKRSR LMQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [454-555] |
1 11 21 31 41 51
| | | | | |
1 RHHVPPRRSW GASLVKDRSE TNTLSSSLRG SLSGTRQASS CQSGVIDLNV AYHASPRKIY 60
61 DGSHESPCNK DFPRLFLQKE LTTSLGGPGK IGDFVWKDLR KR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.796 | a.74.1 | Cyclin-like |
| View | Download | 0.796 | a.74.1 | Cyclin-like |
| View | Download | 0.580 | a.74.1 | Cyclin-like |
| View | Download | 0.580 | a.74.1 | Cyclin-like |
| View | Download | 0.556 | a.74.1 | Cyclin-like |
| View | Download | 0.556 | a.74.1 | Cyclin-like |
| View | Download | 0.483 | a.74.1 | Cyclin-like |
| View | Download | 0.483 | a.74.1 | Cyclin-like |
| View | Download | 0.447 | a.74.1 | Cyclin-like |
| View | Download | 0.424 | a.74.1 | Cyclin-like |
| View | Download | 0.376 | a.59.1 | PAH2 domain |
| View | Download | 0.284 | a.74.1 | Cyclin-like |
| View | Download | 0.218 | a.4.12 | TrpR-like |
|
Region A: Residues: [556-765] |
1 11 21 31 41 51
| | | | | |
1 RNLAHVRVLF SQNLDDETVK QQKKIMVRLG ISPASSSADS THFIADRFAR TRNMLEAIAL 60
61 GKFVVTPIWL ESCAQTRCLI DEKSYILRDI KKEKDGFCLL TSLARAKQHP LLKGFKVCIT 120
121 PSIKPSRGMI TDLVKMTQGQ VVEASEIIAA EDRNFPEDVL ILSCKEDRDF CLPFVNQGTV 180
181 SSQFQRKGTK EIHKFTAACL LLSTTDWYKQ
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 2azmA |
| Description: | Crystal structure of the MDC1 brct repeat in complex with the histone tail of gamma-H2AX |
Matching Structure (courtesy of the PDB): |
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