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View Structure Prediction Details

Protein: gi|18408624, gi|...
Organism: Arabidopsis thaliana
Length: 433 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18408624, gi|....

Description E-value Query
Range
Subject
Range
gi|221089178, gi... - gi|221089178|ref|ZP_03558700.1| GMP synthase, large subunit [Geobacillus sp. Y412MC61], gi|220706876...
GUAA_GEOKA - GMP synthase [glutamine-hydrolyzing] OS=Geobacillus kaustophilus GN=guaA PE=3 SV=1
gi|229328416, gi... - gi|229500698|ref|ZP_04394346.1| GMP synthase, large subunit [Geobacillus sp. Y412MC52], gi|229328416...
GUAA_GEOKA - GMP synthase [glutamine-hydrolyzing] OS=Geobacillus kaustophilus (strain HTA426) GN=guaA PE=3 SV=1
312.0 [0..23] [433..9]

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Predicted Domain #1
Region A:
Residues: [1-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNPSVNDLS QVLPRVLVVS RRTLRKNKFV DFVGEYHLDL IVENGAVPVI VPRVAGVHKL  60
   61 LESFKPIHGV LLCEGEDIDP SLYESEISSL SPQELDEIRK THASDTAIDK EKDSIEFALA 120
  121 KLCLEQNIPY LGICRGSQVL NVACGGSLYQ DLEKEVTIKV PEEHKRNHID YDDYDGYRHE 180
  181 VKIVKNSPLH KWFKDSLDEE KMEILVNSYH HQGVKRLAQR FVPMAFAPDG LIEGFYDPDM 240
  241 YNPEEGKFLM GLQFHPERMR KNGSDEFDFP GCPVAYQEFA KAVIACQKKV NSFLSVPKKL 300
  301 ELNPEMENKR KILVRSFSLA RSMYTRSHSL KNQSTESELE VGAEFLESNT ALSVQQEMRL 360
  361 KEMGATMRNG GSFTEKLRLD EKKQRKAMNI MKNMNIERLS ELMAFYHLMG KISSEVLERK 420
  421 LHASVSDLNL TPQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.154902
Match: 1gpmA
Description: GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity 1.86890906127173 bayes_pls_golite062009
catalytic activity 1.30391542469987 bayes_pls_golite062009
anthranilate synthase activity 1.21184543688778 bayes_pls_golite062009
oxo-acid-lyase activity 0.0620506742330145 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle