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View Structure Prediction Details

Protein: gi|6730739, gi|1...
Organism: Arabidopsis thaliana
Length: 444 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6730739, gi|1....

Description E-value Query
Range
Subject
Range
gi|20334730, gi|... - gi|8927652|gb|AAF82143.1|AC034256_7 Contains similarity to COBW-like protein from Homo sapiens gb|AF...
318.0 [0..1] [444..1]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR  60
   61 RQRFSSVSAS ATQTEDSDVT TKIP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 2iy3A
Description: No description for 2iy3A was found.

Predicted Domain #2
Region A:
Residues: [85-444]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNRIPATII TGFLGSGKTT LLNHILTRDH GKRIAVIENE FGEVDIDGSL VASKSIGAED  60
   61 IVMLNNGCLC CTVRGDLVRM IGELVNTKKG KFDHIVIETT GLANPAPIIQ TFYAEEEIFN 120
  121 DVKLDGVVTL VDAKHARLHL DEVKPEGVVN EAVEQIAYAD RIIVNKTDLV GEAELGSVVQ 180
  181 RIKTINSMAQ MTRTKYGNVD LDYVLGIGGF DLERIESSVN EDDKGDHHDH DHDHHHDHNH 240
  241 DHDHHHHDGH DHHHHSHDHT HDPGVSSVSI VCEGSLDLEK ANMWLGTLLM ERSEDIYRMK 300
  301 GLLSVHTMEE RFVFQGVHDI FQGSPDRLWG REEERVNKIV FIGKNLNREE LEKGFKACLI 360
  361 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.0
Match: 1nijA
Description: Hypothetical protein YjiA, N-terminal domain; Hypothetical protein YjiA, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.00104173493322 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle