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View Structure Prediction Details

Protein: gi|11358143, gi|...
Organism: Arabidopsis thaliana
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358143, gi|....

Description E-value Query
Range
Subject
Range
APA2_ARATH - Aspartic proteinase A2 OS=Arabidopsis thaliana GN=APA2 PE=2 SV=1
193.0 [0..22] [214..269]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGRFGVLLV LFLLSWSCHA TNPILLEPFE SAHDDNQVCE LCDKYVTLVI DYLQDYDNQN  60
   61 ELVEALHISC SQIPPLKKQC LSMVDHYTQL FFTQVSTIKS DQICKRLNLC QAVTPAFASQ 120
  121 VHQGNCEACR ETVSEVVTKL KDPETKLKII RLLLKECKSL NNYQDKCKKM VFEYGPLMLT 180
  181 DLQKFLEKKD VCTILHVCPG PATHRDYVPA VESLADS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.221849
Match: 1qdmA
Description: (Pro)phytepsin; Plant acid proteinase, phytepsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle