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View Structure Prediction Details

Protein: gi|222422945, gi...
Organism: Arabidopsis thaliana
Length: 561 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222422945, gi....

Description E-value Query
Range
Subject
Range
CG13625-PA - This gene is referred to in FlyBase by the symbol Dmel\CG13625 (CG13625, FBgn0039210). It is a prote...
gi|220945000, gi... - gi|220954826|gb|ACL89956.1| CG13625-PA [synthetic construct], gi|220945000|gb|ACL85043.1| CG13625-PA...
206.0 [0..33] [561..125]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN  60
   61 EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS GWVTLPLNRE DTQSNISPPR 120
  121 RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHNSPSPEPN RKHTKPVSLD SDMSPPRKRK ARNDSPSPEP EAKYLSEDLS PPRRRHVHSP  60
   61 SRESSRKRSD SVELDDDLSP PRRKRDLHGS PVSDVKKKSN DLSPPRRRRY HSPSPEPARR 120
  121 SSKSFGSNAD LSPPGRNINM KDSQDSDLSP QRKAADLRRS SENVSRSSNF DSSPPRRPRR 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [335-561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSPPQISKE QRKTGLISGK DIGSEYRKKK EDEKLRFKNM DSELTGQNAE AVFRDKITGK  60
   61 RISKEEYLKS KQKKVIEKPK EIKLEWGKGL AQKREAEARL QELELEKDKP FARTRDDPEL 120
  121 DQMMKERVRF GDPMAHLVKK RKYETTLVDL GDDEEMKKSG FIIPQSVPKH SWLTRRLEAA 180
  181 SNRYGIKPGR HWDGVDRSNG TEKDLIKKTN ERKATEIEAY LWSVADM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle