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View Structure Prediction Details

Protein: gi|11357965, gi|...
Organism: Arabidopsis thaliana
Length: 401 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11357965, gi|....

Description E-value Query
Range
Subject
Range
gi|28950979, gi|... - gi|28950979|gb|AAO63413.1| At5g01420 [Arabidopsis thaliana], gi|26451045|dbj|BAC42628.1| unknown pro...
493.0 [0..1] [401..1]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSRMKFAK KLKSIRAGEY LNQDRILQVL SAADEFLPKI SNHIPQITSA ASIWRTPQKS  60
   61 ENQIANVTEL LENVRQGEEE ASGNFVGDEE NVRPPVNQIP RVPCDRKESK LAVSCGSDTG 120
  121 IGRKSFGSGF RRPDLNSTTL FDPKLLEAFE LAALCFRKIK DFSREARVND EDDIVFPEEE 180
  181 EIRKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNSIPPVISV VEYRRKDENV VVLHKDDGNA LQIVNAIREE VIGEEDIGKD GNTLMDPLLE  60
   61 FEERCPPGGE ESVVFYTTTL RGIRKTFDDC NMIRFLLDSF KVKYYERDVS MHREYREELR 120
  121 RISAAETEVL PPVLFVKGRC IGGAQRVLGL HEQG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.69897
Match: 1nm3A
Description: C-terminal, Grx domain of Hybrid-Prx5; N-terminal, Prx domain of Hybrid-Prx5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142133664747919 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [340-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFKILFEGIP ITGDERCRRC DGFRFLMCDG CRGSRRIISG DGSRIQCLIC NENGLIVCVG  60
   61 CS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.045757
Match: 1exkA
Description: Cysteine-rich domain of the chaperone protein DnaJ.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.036672061154828 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle