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View Structure Prediction Details

Protein: gi|7486754, gi|5...
Organism: Arabidopsis thaliana
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7486754, gi|5....

Description E-value Query
Range
Subject
Range
gi|92429658 - gi|92429658|gb|ABE77191.1| putative non-LTR retroelement reverse transcriptase [Sorghum bicolor]
190.0 [0..2] [329..1042]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVERLKPLMT NLIGPAQASF IPGRVSTDNI VFVQEAVHSM RRKKGVKGWM LLKLDLEKAY  60
   61 DRIRWDYLED TLISAGFPEV WLPEIARSTF GARRVAPEVG RADASKRPRV SDHRWGFRYD 120
  121 DMAAPFTSNS VACAELLREI GRGSGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [147-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSMPLDLKEE KVFAGAARKS IEAIAEWDRL TYLYERCVRS LSVEATNAKD AHEALAVEKE  60
   61 KVAQALADLA RSQDDAKEMK RKYDELAGRA LSEMKRLRER RLEYAEFVRR SALDKMAELV 120
  121 QKRLDRIKAH IDDTKAAEPK FLEFNQMLRL VADAEELEAE VKAFGITDLM DGDFDVRTLF 180
  181 AELSPDNRNS VPPPTEGEDL ADGRGECEGQ AGERIVGQTE VRDEIADARD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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