Protein: | gi|6561964, gi|1... |
Organism: | Arabidopsis thaliana |
Length: | 519 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6561964, gi|1....
Description | E-value | Query Range |
Subject Range |
|
336.0 | [0..31] | [506..97] |
|
336.0 | [0..31] | [506..98] |
|
334.0 | [0..17] | [506..79] |
|
327.0 | [0..17] | [506..79] |
|
319.0 | [0..24] | [506..54] |
Region A: Residues: [1-129] |
1 11 21 31 41 51 | | | | | | 1 METRIELKKK ISEIFKDFMT VITQLEELGN AANNFLLRFQ QGLSFLQRPP IVTSSKLIEN 60 61 IIKKNETRRL KSYIEAGCIN IHDAAQSTRA YVNVAAKNLL IELERLTDEA ALAIESATQL 120 121 DKDSSDGLQ |
Detection Method: | |
Confidence: | 4.39794 |
Match: | 1rgoA |
Description: | Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [130-204] |
1 11 21 31 41 51 | | | | | | 1 QVTCDEENET VQLPQGPEVT EYAALIAVIY SMMKQNYVMQ DKIVRSLSLK SSSGELETYS 60 61 LMWSLRPGVF EFFVA |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.720 | a.237.1 | Description not found. |
View | Download | 0.656 | a.190.1 | Description not found. |
View | Download | 0.631 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.631 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.614 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.614 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.586 | a.4.1 | Homeodomain-like |
View | Download | 0.561 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.552 | a.4.1 | Homeodomain-like |
View | Download | 0.521 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.481 | a.4.1 | Homeodomain-like |
View | Download | 0.458 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.454 | d.188.1 | Prokaryotic ribosomal protein L17 |
View | Download | 0.445 | a.4.1 | Homeodomain-like |
Region A: Residues: [205-519] |
1 11 21 31 41 51 | | | | | | 1 TFDGATKKKK TKMDYQNKLV LAPMVRVGTL SFRMLAAEYG ADITYGEEII DHKLVKCERR 60 61 LNVASGTSEF VEKGTDNVVF STCDEEKSRV VFQMGTSDAV RALKASEIVC NDVATIDINM 120 121 GCPKAFSIQG GMGAALLSKP ELIHDILATL KRNLDVPVTC KIRLLKSPAD TVELARRIEK 180 181 LGVPALAVHG RKIADRPRDP AKWDEIADVV AALSIPVIAN GDVLEYDDFS RIKTATGAAS 240 241 VMVARGAMWN ASIFSPKGKS HWEDVKKKYL RKSILWNNDV KSTKYTIKEM IAHHSCLELP 300 301 EGKSINKADT LEDLA |
Detection Method: | |
Confidence: | 53.69897 |
Match: | 1vhnA |
Description: | Crystal structure of a putative flavin oxidoreductase with flavin |
Matching Structure (courtesy of the PDB): |