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View Structure Prediction Details

Protein: gi|7486357, gi|5...
Organism: Arabidopsis thaliana
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7486357, gi|5....

Description E-value Query
Range
Subject
Range
SDE2_MOUSE - Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1
293.0 [0..31] [414..28]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQSSKPLQ FFVRLLDGKS LTLSFSSPLA YGEQIKQRIF EQTKIPTHLQ RLISGGYQIS  60
   61 DGSAISQPDA TVNLVLSLRG G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 2ojrA
Description: No description for 2ojrA was found.

Predicted Domain #2
Region A:
Residues: [82-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGGFGSLLRG GGMKAGQKKT NNFDACRDMS GRRLRHVNAE NRLQEWKDGE EGRNLEKKAL  60
   61 EYLKKQSNKV KQGVGNGATQ KYVNKYKEES DKCILAVDLA LNESFKNGKR KAKIGAESEK 120
  121 KKRLKIWKGK RAVEDSDSDD SDDEEDEKSV VLNNGGHDGD SSGKSSCNSG SEEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [256-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDAVMHRSFD VVKEEITGVQ GIIEEEMNDL PVSVAVDDAN TVADEMDQLE KVEKSSGDAG  60
   61 KNLVDVACET L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [327-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITSAAVKREG TAKETVSVDA VCCKPVEPLN FDDFNSPADM EVLGMERLKT ELQSRGLKCG  60
   61 GTLRERAARL FLLKSTPLDK LPKKLLAKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle