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View Structure Prediction Details

Protein: YODA_ARATH
Organism: Arabidopsis thaliana
Length: 883 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for YODA_ARATH.

Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWWSKSKDE KKKTNKESII DAFNRKLGFA SEDRSSGRSR KSRRRRDEIV SERGAISRLP  60
   61 SRSPSPSTRV SRCQSFAERS PAVPLPRPIV RPHVTSTDSG MNGSQRPGLD ANLKPSWLPL 120
  121 PKPHGATSIP DNTGA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPDFATASVS SGSSVGDIPS DSLLSPLASD CENGNRTPVN ISSRDQSMHS NKNSAEMFKP  60
   61 VPNKNRILSA SPRRRPLGTH VKNLQIPQRD LVLCSAPDSL LSSPSRSPMR SFIPDQV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [253-660]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNHGLLISKP YSDVSLLGSG QCSSPGSGYN SGNNSIGGDM ATQLFWPQSR CSPECSPVPS  60
   61 PRMTSPGPSS RIQSGAVTPL HPRAGGSTTG SPTRRLDDNR QQSHRLPLPP LLISNTCPFS 120
  121 PTYSAATSPS VPRSPARAEA TVSPGSRWKK GRLLGMGSFG HVYLGFNSES GEMCAMKEVT 180
  181 LCSDDPKSRE SAQQLGQEIS VLSRLRHQNI VQYYGSETVD DKLYIYLEYV SGGSIYKLLQ 240
  241 EYGQFGENAI RNYTQQILSG LAYLHAKNTV HRDIKGANIL VDPHGRVKVA DFGMAKHITA 300
  301 QSGPLSFKGS PYWMAPEVIK NSNGSNLAVD IWSLGCTVLE MATTKPPWSQ YEGVPAMFKI 360
  361 GNSKELPDIP DHLSEEGKDF VRKCLQRNPA NRPTAAQLLD HAFVRNVM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.30103
Match: 2j0jA
Description: No description for 2j0jA was found.

Predicted Domain #4
Region A:
Residues: [661-714]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMERPIVSGE PAEAMNVASS TMRSLDIGHA RSLPCLDSED ATNYQQKGLK HGSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.69897
Match: 2qnjA
Description: No description for 2qnjA was found.

Predicted Domain #5
Region A:
Residues: [715-883]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSISQSPRNM SCPISPVGSP IFHSHSPHIS GRRSPSPISS PHALSGSSTP LTGCGGAIPF  60
   61 HHQRQTTVNF LHEGIGSSRS PGSGGNFYTN SFFQEPSRQQ DRSRSSPRTP PHVFWDNNGS 120
  121 IQPGYNWNKD NQPVLSDHVS QQLLSEHLKL KSLDLRPGFS TPGSTNRGP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle