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View Structure Prediction Details

Protein: ROFG6_ARATH
Organism: Arabidopsis thaliana
Length: 579 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROFG6_ARATH.

Description E-value Query
Range
Subject
Range
gi|125572637, gi... - gi|56784047|dbj|BAD82675.1| hypothetical protein [Oryza sativa Japonica Group], gi|125572637|gb|EAZ1...
762.0 [0..61] [574..34]
ROGF5_ARATH - Rop guanine nucleotide exchange factor 5 OS=Arabidopsis thaliana GN=ROPGEF5 PE=2 SV=1
744.0 [0..5] [577..7]
gi|92874517 - gi|92874517|gb|ABE82772.1| Protein of unknown function DUF315 [Medicago truncatula]
700.0 [0..9] [556..17]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS  60
   61 SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDFGFKRVGT ETSEIELLKE RMAKLLLGED MSGSGEGVCP ALAISNAITN LYAAILGQQW  60
   61 RLEPIPSEKK LMWRREIEVL LSVSDHIVEL VPSFQNFPNG NKIEVMNCRP RSDLFTCLPA 120
  121 LRKLDNMLIE ILDSFGETEF WYVDQGIVAA ESARSNSFRE DGDKWWLPLP RVPSDGLTEQ 180
  181 TRKKLDHTRE FTNQILKACM SINSIALAEM EVPQSYLEAL PKNGRSCLGD FLYRNITSDN 240
  241 FSADHLLESI DLSSELAVVE MANRVEASMY VWRRRAHSRH LISLYRSTST RWGMIVKEMM 300
  301 MHQTDGDKRE IFAERAESLL IRLKQRFPGL RQTALDTSKI QYNKDVGKSI LESYSRVLES 360
  361 LAYSIGVRIE EVLFMDDISK DDGDGDDDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 178.0
Match: 2ntxA
Description: No description for 2ntxA was found.

Predicted Domain #3
Region A:
Residues: [483-579]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSDKLRLLSK EAASGGSGSL REKLSAPSLF SVSFSGTSTP YRTLSFSAST PSYSPMPLIS  60
   61 PINGGRGGER APFLSGRNIR ERCGFGPKKA LANYLRG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle