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View Structure Prediction Details

Protein: PDI54_ARATH
Organism: Arabidopsis thaliana
Length: 480 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDI54_ARATH.

Description E-value Query
Range
Subject
Range
gi|92892142 - gi|92892142|gb|ABE91160.1| Thioredoxin, putative [Medicago truncatula]
304.0 [0..1] [480..1]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTSKIKSV DFYRKIPRDL TEASLSGAGL SIIAALSMIF LFGMELNNYL AVSTSTSVIV  60
   61 DRSADGDFLR LDFNISFPSL SCEFASVDVS DVLGTNRLNV TKTIRKFSID SNMRPTGSEF 120
  121 HAGEVL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.30103
Match: 2albA
Description: No description for 2albA was found.

Predicted Domain #2
Region A:
Residues: [127-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLINHGDETG EEIVEDSVPL TGRNFDTFTH QFPILVVNFY APWCYWCNLL KPSWEKAAKQ  60
   61 IKERYDPEMD GRVILAKVDC TQEGDLCRRN HIQGYPSIRI FRKGSDLKDD NAHHDHESYY 120
  121 GDRDTESLVK MVVSLVEPIH LEPHNLALED KSDNSSRTLK KAPSTGGCRV EGYMRVKKVP 180
  181 GNLMVSARSG SHSFDSSQMN MSHVVNHLSF GRRIMPQKFS EFKRLSPYLG LSHDRLDGRS 240
  241 FINQRDLGPN VTIEHYLQIV KTEVVKSNGQ ALVEAYEYTA HSSVAH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [413-480]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYYLPVAKFH FELSPMQVLI TENSKSFSHF ITNVCAIIGG VFTVAGILDS ILHHSMTLMK  60
   61 KIELGKNF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle